BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

316 related articles for article (PubMed ID: 15980509)

  • 1. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
    Berezikov E; Guryev V; Cuppen E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W447-50. PubMed ID: 15980509
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
    Berezikov E; Guryev V; Plasterk RH; Cuppen E
    Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.
    Corcoran DL; Feingold E; Benos PV
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W442-6. PubMed ID: 15980508
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PromAn: an integrated knowledge-based web server dedicated to promoter analysis.
    Lardenois A; Chalmel F; Bianchetti L; Sahel JA; Léveillard T; Poch O
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W578-83. PubMed ID: 16845074
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring conservation of transcription factor binding sites with CONREAL.
    Berezikov E; Guryev V; Cuppen E
    Methods Mol Biol; 2007; 395():437-48. PubMed ID: 17993690
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D
    Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ConSite: web-based prediction of regulatory elements using cross-species comparison.
    Sandelin A; Wasserman WW; Lenhard B
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W249-52. PubMed ID: 15215389
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dcode.org anthology of comparative genomic tools.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CREME: Cis-Regulatory Module Explorer for the human genome.
    Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A search tool for identification and analysis of conserved sequence patterns in Saccharomyces spp. orthologous promoter.
    Kohli DK; Srikanth CV; Bachhawat AK
    In Silico Biol; 2004; 4(4):411-5. PubMed ID: 15506991
    [TBL] [Abstract][Full Text] [Related]  

  • 12. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NXSensor web tool for evaluating DNA for nucleosome exclusion sequences and accessibility to binding factors.
    Luykx P; Bajić IV; Khuri S
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W560-5. PubMed ID: 16845070
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.
    Blanco E; Farré D; Albà MM; Messeguer X; Guigó R
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D63-7. PubMed ID: 16381947
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
    Oshchepkov DY; Vityaev EE; Grigorovich DA; Ignatieva EV; Khlebodarova TM
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W208-12. PubMed ID: 15215382
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PromoterPlot: a graphical display of promoter similarities by pattern recognition.
    Di Cara A; Schmidt K; Hemmings BA; Oakeley EJ
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W423-6. PubMed ID: 15980503
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
    Li L; Cheng AS; Jin VX; Paik HH; Fan M; Li X; Zhang W; Robarge J; Balch C; Davuluri RV; Kim S; Huang TH; Nephew KP
    Bioinformatics; 2006 Sep; 22(18):2210-6. PubMed ID: 16809387
    [TBL] [Abstract][Full Text] [Related]  

  • 18. QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
    Kikin O; D'Antonio L; Bagga PS
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W676-82. PubMed ID: 16845096
    [TBL] [Abstract][Full Text] [Related]  

  • 19. KBERG: KnowledgeBase for Estrogen Responsive Genes.
    Tang S; Zhang Z; Tan SL; Tang MH; Kumar AP; Ramadoss SK; Bajic VB
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D732-6. PubMed ID: 17090589
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CRSD: a comprehensive web server for composite regulatory signature discovery.
    Liu CC; Lin CC; Chen WS; Chen HY; Chang PC; Chen JJ; Yang PC
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W571-7. PubMed ID: 16845073
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.