759 related articles for article (PubMed ID: 16000407)
21. Statistical alignment: computational properties, homology testing and goodness-of-fit.
Hein J; Wiuf C; Knudsen B; Møller MB; Wibling G
J Mol Biol; 2000 Sep; 302(1):265-79. PubMed ID: 10964574
[TBL] [Abstract][Full Text] [Related]
22. Joint Bayesian estimation of alignment and phylogeny.
Redelings BD; Suchard MA
Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
[TBL] [Abstract][Full Text] [Related]
23. Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
Kim J; Sinha S
Bioinformatics; 2007 Feb; 23(3):289-97. PubMed ID: 17110370
[TBL] [Abstract][Full Text] [Related]
24. A "Long Indel" model for evolutionary sequence alignment.
Miklós I; Lunter GA; Holmes I
Mol Biol Evol; 2004 Mar; 21(3):529-40. PubMed ID: 14694074
[TBL] [Abstract][Full Text] [Related]
25. Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming.
Pugacheva V; Korotkov A; Korotkov E
Stat Appl Genet Mol Biol; 2016 Oct; 15(5):381-400. PubMed ID: 27337743
[TBL] [Abstract][Full Text] [Related]
26. ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.
Zhan Q; Wang N; Jin S; Tan R; Jiang Q; Wang Y
BMC Bioinformatics; 2019 Nov; 20(Suppl 18):573. PubMed ID: 31760933
[TBL] [Abstract][Full Text] [Related]
27. A space-efficient algorithm for the constrained pairwise sequence alignment problem.
He D; Arslan AN
Genome Inform; 2005; 16(2):237-46. PubMed ID: 16901106
[TBL] [Abstract][Full Text] [Related]
28. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
29. Accurate anchoring alignment of divergent sequences.
Huang W; Umbach DM; Li L
Bioinformatics; 2006 Jan; 22(1):29-34. PubMed ID: 16301203
[TBL] [Abstract][Full Text] [Related]
30. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
Arribas-Gil A; Metzler D; Plouhinec JL
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
[TBL] [Abstract][Full Text] [Related]
31. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
Liu Y; Schmidt B; Maskell DL
Bioinformatics; 2010 Aug; 26(16):1958-64. PubMed ID: 20576627
[TBL] [Abstract][Full Text] [Related]
32. A sequence alignment algorithm with an arbitrary gap penalty function.
Dewey TG
J Comput Biol; 2001; 8(2):177-90. PubMed ID: 11454304
[TBL] [Abstract][Full Text] [Related]
33. ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process.
Maiolo M; Gatti L; Frei D; Leidi T; Gil M; Anisimova M
BMC Bioinformatics; 2021 Oct; 22(1):518. PubMed ID: 34689750
[TBL] [Abstract][Full Text] [Related]
34. Novel hybrid genetic algorithm for progressive multiple sequence alignment.
Afridi MI
Int J Bioinform Res Appl; 2013; 9(6):614-24. PubMed ID: 24084242
[TBL] [Abstract][Full Text] [Related]
35. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C; Higgins DG; Heringa J
J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570
[TBL] [Abstract][Full Text] [Related]
36. Pairwise alignment for very long nucleic acid sequences.
Sun J; Chen K; Hao Z
Biochem Biophys Res Commun; 2018 Jul; 502(3):313-317. PubMed ID: 29800571
[TBL] [Abstract][Full Text] [Related]
37. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
38. Picking alignments from (Steiner) trees.
Lam F; Alexandersson M; Pachter L
J Comput Biol; 2003; 10(3-4):509-20. PubMed ID: 12935341
[TBL] [Abstract][Full Text] [Related]
39. Comparing programs and methods to use for global multiple sequence alignment.
Mount DW
Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.ip61. PubMed ID: 20147201
[TBL] [Abstract][Full Text] [Related]
40. Positional statistical significance in sequence alignment.
Yu L; Smith TF
J Comput Biol; 1999; 6(2):253-9. PubMed ID: 10421526
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
