These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

85 related articles for article (PubMed ID: 16006623)

  • 21. Combining the GOR V algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence.
    Kloczkowski A; Ting KL; Jernigan RL; Garnier J
    Proteins; 2002 Nov; 49(2):154-66. PubMed ID: 12210997
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison.
    Kann MG; Goldstein RA
    Proteins; 2002 Aug; 48(2):367-76. PubMed ID: 12112703
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Increased detection of structural templates using alignments of designed sequences.
    Larson SM; Garg A; Desjarlais JR; Pande VS
    Proteins; 2003 May; 51(3):390-6. PubMed ID: 12696050
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.
    Friedberg I; Kaplan T; Margalit H
    Protein Sci; 2000 Nov; 9(11):2278-84. PubMed ID: 11152139
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Application of compression-based distance measures to protein sequence classification: a methodological study.
    Kocsor A; Kertész-Farkas A; Kaján L; Pongor S
    Bioinformatics; 2006 Feb; 22(4):407-12. PubMed ID: 16317070
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Blast sampling for structural and functional analyses.
    Friedrich A; Ripp R; Garnier N; Bettler E; Deléage G; Poch O; Moulinier L
    BMC Bioinformatics; 2007 Feb; 8():62. PubMed ID: 17319945
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).
    Lee MM; Bundschuh R; Chan MK
    Proteins; 2008 May; 71(3):1409-19. PubMed ID: 18076050
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Remote protein homology detection and fold recognition using two-layer support vector machine classifiers.
    Muda HM; Saad P; Othman RM
    Comput Biol Med; 2011 Aug; 41(8):687-99. PubMed ID: 21704312
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
    Stevens FJ
    J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
    [TBL] [Abstract][Full Text] [Related]  

  • 30. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Motif-based protein ranking by network propagation.
    Kuang R; Weston J; Noble WS; Leslie C
    Bioinformatics; 2005 Oct; 21(19):3711-8. PubMed ID: 16076885
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage.
    Kaushik S; Mutt E; Chellappan A; Sankaran S; Srinivasan N; Sowdhamini R
    PLoS One; 2013; 8(2):e56449. PubMed ID: 23437136
    [TBL] [Abstract][Full Text] [Related]  

  • 33. BioV Suite--a collection of programs for the study of transport protein evolution.
    Reddy VS; Saier MH
    FEBS J; 2012 Jun; 279(11):2036-46. PubMed ID: 22568782
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Phylogenetic information improves homology detection.
    Rehmsmeier M; Vingron M
    Proteins; 2001 Dec; 45(4):360-71. PubMed ID: 11746684
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches.
    Yu DS; Lee DH; Kim SK; Lee CH; Song JY; Kong EB; Kim JF
    J Microbiol Biotechnol; 2012 Aug; 22(8):1054-8. PubMed ID: 22713980
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Getting the most from PSI-BLAST.
    Jones DT; Swindells MB
    Trends Biochem Sci; 2002 Mar; 27(3):161-4. PubMed ID: 11893514
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Protein seer: a Web server for protein homology detection.
    Logan BT; Karaoz U; Moreno PJ; Weng Z; Kasif S
    Conf Proc IEEE Eng Med Biol Soc; 2004; 2004():3064-7. PubMed ID: 17270925
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fast, sensitive detection of protein homologs using deep dense retrieval.
    Hong L; Hu Z; Sun S; Tang X; Wang J; Tan Q; Zheng L; Wang S; Xu S; King I; Gerstein M; Li Y
    Nat Biotechnol; 2024 Aug; ():. PubMed ID: 39123049
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A sequence sub-sampling algorithm increases the power to detect distant homologues.
    Johnston CR; Shields DC
    Nucleic Acids Res; 2005; 33(12):3772-8. PubMed ID: 16006623
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Probabilistic alignment detects remote homology in a pair of protein sequences without homologous sequence information.
    Koike R; Kinoshita K; Kidera A
    Proteins; 2007 Feb; 66(3):655-63. PubMed ID: 17152080
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 5.