These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

127 related articles for article (PubMed ID: 1603810)

  • 1. A multiple-start Monte Carlo docking method.
    Hart TN; Read RJ
    Proteins; 1992 Jul; 13(3):206-22. PubMed ID: 1603810
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Water molecules participate in proteinase-inhibitor interactions: crystal structures of Leu18, Ala18, and Gly18 variants of turkey ovomucoid inhibitor third domain complexed with Streptomyces griseus proteinase B.
    Huang K; Lu W; Anderson S; Laskowski M; James MN
    Protein Sci; 1995 Oct; 4(10):1985-97. PubMed ID: 8535235
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Contribution of peptide bonds to inhibitor-protease binding: crystal structures of the turkey ovomucoid third domain backbone variants OMTKY3-Pro18I and OMTKY3-psi[COO]-Leu18I in complex with Streptomyces griseus proteinase B (SGPB) and the structure of the free inhibitor, OMTKY-3-psi[CH2NH2+]-Asp19I.
    Bateman KS; Huang K; Anderson S; Lu W; Qasim MA; Laskowski M; James MN
    J Mol Biol; 2001 Jan; 305(4):839-49. PubMed ID: 11162096
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Atomic solvation parameters in the analysis of protein-protein docking results.
    Cummings MD; Hart TN; Read RJ
    Protein Sci; 1995 Oct; 4(10):2087-99. PubMed ID: 8535245
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Monte Carlo docking of oligopeptides to proteins.
    Caflisch A; Niederer P; Anliker M
    Proteins; 1992 Jul; 13(3):223-30. PubMed ID: 1603811
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structural insights into the non-additivity effects in the sequence-to-reactivity algorithm for serine peptidases and their inhibitors.
    Lee TW; Qasim MA; Laskowski M; James MN
    J Mol Biol; 2007 Mar; 367(2):527-46. PubMed ID: 17266986
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SeleX-CS: a new consensus scoring algorithm for hit discovery and lead optimization.
    Bar-Haim S; Aharon A; Ben-Moshe T; Marantz Y; Senderowitz H
    J Chem Inf Model; 2009 Mar; 49(3):623-33. PubMed ID: 19231809
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rational automatic search method for stable docking models of protein and ligand.
    Mizutani MY; Tomioka N; Itai A
    J Mol Biol; 1994 Oct; 243(2):310-26. PubMed ID: 7932757
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Automatic identification and representation of protein binding sites for molecular docking.
    Ruppert J; Welch W; Jain AN
    Protein Sci; 1997 Mar; 6(3):524-33. PubMed ID: 9070435
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A QXP-based multistep docking procedure for accurate prediction of protein-ligand complexes.
    Alisaraie L; Haller LA; Fels G
    J Chem Inf Model; 2006; 46(3):1174-87. PubMed ID: 16711737
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Dynamic ligand design and combinatorial optimization: designing inhibitors to endothiapepsin.
    Stultz CM; Karplus M
    Proteins; 2000 Aug; 40(2):258-89. PubMed ID: 10842341
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Monte Carlo docking with ubiquitin.
    Cummings MD; Hart TN; Read RJ
    Protein Sci; 1995 May; 4(5):885-99. PubMed ID: 7663344
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
    Liu Z; Dominy BN; Shakhnovich EI
    J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Automated generation of MCSS-derived pharmacophoric DOCK site points for searching multiconformation databases.
    Joseph-McCarthy D; Alvarez JC
    Proteins; 2003 May; 51(2):189-202. PubMed ID: 12660988
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations.
    Okamoto Y
    J Mol Graph Model; 2004 May; 22(5):425-39. PubMed ID: 15099838
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
    Del Carpio-Muñoz CA; Ichiishi E; Yoshimori A; Yoshikawa T
    Proteins; 2002 Sep; 48(4):696-732. PubMed ID: 12211037
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamic docking and electron-transfer between cytochrome b5 and a suite of myoglobin surface-charge mutants. Introduction of a functional-docking algorithm for protein-protein complexes.
    Liang ZX; Kurnikov IV; Nocek JM; Mauk AG; Beratan DN; Hoffman BM
    J Am Chem Soc; 2004 Mar; 126(9):2785-98. PubMed ID: 14995196
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A new Hybrid Monte Carlo algorithm for protein potential function test and structure refinement.
    Zhang H
    Proteins; 1999 Mar; 34(4):464-71. PubMed ID: 10081959
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.