These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

488 related articles for article (PubMed ID: 16105904)

  • 1. NdPASA: a pairwise sequence alignment server for distantly related proteins.
    Li W; Wang J; Feng JA
    Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improving pairwise sequence alignment between distantly related proteins.
    Feng JA
    Methods Mol Biol; 2007; 395():255-68. PubMed ID: 17993679
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DOMAC: an accurate, hybrid protein domain prediction server.
    Cheng J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
    [TBL] [Abstract][Full Text] [Related]  

  • 6. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
    Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
    Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
    Topham CM; Rouquier M; Tarrat N; André I
    Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
    [TBL] [Abstract][Full Text] [Related]  

  • 8. INTERALIGN: interactive alignment editor for distantly related protein sequences.
    Pible O; Imbert G; Pellequer JL
    Bioinformatics; 2005 Jul; 21(14):3166-7. PubMed ID: 15870166
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PROMALS web server for accurate multiple protein sequence alignments.
    Pei J; Kim BH; Tang M; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
    [TBL] [Abstract][Full Text] [Related]  

  • 10. WebAllergen: a web server for predicting allergenic proteins.
    Riaz T; Hor HL; Krishnan A; Tang F; Li KB
    Bioinformatics; 2005 May; 21(10):2570-1. PubMed ID: 15746289
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MAGOS: multiple alignment and modelling server.
    Garnier N; Friedrich A; Bolze R; Bettler E; Moulinier L; Geourjon C; Thompson JD; Deléage G; Poch O
    Bioinformatics; 2006 Sep; 22(17):2164-5. PubMed ID: 16820425
    [TBL] [Abstract][Full Text] [Related]  

  • 12. QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.
    Suhrer SJ; Gruber M; Sippl MJ
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W411-5. PubMed ID: 17478501
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ProBias: a web-server for the identification of user-specified types of compositionally biased segments in protein sequences.
    Kuznetsov IB
    Bioinformatics; 2008 Jul; 24(13):1534-5. PubMed ID: 18480099
    [TBL] [Abstract][Full Text] [Related]  

  • 14. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
    Dosztányi Z; Csizmok V; Tompa P; Simon I
    Bioinformatics; 2005 Aug; 21(16):3433-4. PubMed ID: 15955779
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pairwise alignment incorporating dipeptide covariation.
    Crooks GE; Green RE; Brenner SE
    Bioinformatics; 2005 Oct; 21(19):3704-10. PubMed ID: 16123116
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A web-based three-dimensional protein retrieval system by matching visual similarity.
    Yeh JS; Chen DY; Chen BY; Ouhyoung M
    Bioinformatics; 2005 Jul; 21(13):3056-7. PubMed ID: 15840701
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A note on difficult structure alignment problems.
    Sippl MJ; Wiederstein M
    Bioinformatics; 2008 Feb; 24(3):426-7. PubMed ID: 18174182
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H; Zhou Y
    Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FoldUnfold: web server for the prediction of disordered regions in protein chain.
    Galzitskaya OV; Garbuzynskiy SO; Lobanov MY
    Bioinformatics; 2006 Dec; 22(23):2948-9. PubMed ID: 17021161
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Contact-based sequence alignment.
    Kleinjung J; Romein J; Lin K; Heringa J
    Nucleic Acids Res; 2004; 32(8):2464-73. PubMed ID: 15121903
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.