302 related articles for article (PubMed ID: 16109749)
1. Structure clustering features on the Sfold Web server.
Chan CY; Lawrence CE; Ding Y
Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
[TBL] [Abstract][Full Text] [Related]
2. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
3. Sfold web server for statistical folding and rational design of nucleic acids.
Ding Y; Chan CY; Lawrence CE
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W135-41. PubMed ID: 15215366
[TBL] [Abstract][Full Text] [Related]
4. Clustering of RNA secondary structures with application to messenger RNAs.
Ding Y; Chan CY; Lawrence CE
J Mol Biol; 2006 Jun; 359(3):554-71. PubMed ID: 16631786
[TBL] [Abstract][Full Text] [Related]
5. RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble.
Ding Y; Chan CY; Lawrence CE
RNA; 2005 Aug; 11(8):1157-66. PubMed ID: 16043502
[TBL] [Abstract][Full Text] [Related]
6. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
Jossinet F; Westhof E
Bioinformatics; 2005 Aug; 21(15):3320-1. PubMed ID: 15905274
[TBL] [Abstract][Full Text] [Related]
7. Boltzmann probability of RNA structural neighbors and riboswitch detection.
Freyhult E; Moulton V; Clote P
Bioinformatics; 2007 Aug; 23(16):2054-62. PubMed ID: 17573364
[TBL] [Abstract][Full Text] [Related]
8. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
9. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
10. Memory efficient folding algorithms for circular RNA secondary structures.
Hofacker IL; Stadler PF
Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
[TBL] [Abstract][Full Text] [Related]
11. RNAbor: a web server for RNA structural neighbors.
Freyhult E; Moulton V; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
[TBL] [Abstract][Full Text] [Related]
12. RNALOSS: a web server for RNA locally optimal secondary structures.
Clote P
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W600-4. PubMed ID: 15980545
[TBL] [Abstract][Full Text] [Related]
13. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
14. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
15. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
16. ARTS: alignment of RNA tertiary structures.
Dror O; Nussinov R; Wolfson H
Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
[TBL] [Abstract][Full Text] [Related]
17. RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA.
Danilova LV; Pervouchine DD; Favorov AV; Mironov AA
J Bioinform Comput Biol; 2006 Apr; 4(2):589-96. PubMed ID: 16819804
[TBL] [Abstract][Full Text] [Related]
18. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Havgaard JH; Lyngsø RB; Gorodkin J
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
[TBL] [Abstract][Full Text] [Related]
19. Efficient parameter estimation for RNA secondary structure prediction.
Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
[TBL] [Abstract][Full Text] [Related]
20. RNAMST: efficient and flexible approach for identifying RNA structural homologs.
Chang TH; Huang HD; Chuang TN; Shien DM; Horng JT
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W423-8. PubMed ID: 16845040
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]