BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

489 related articles for article (PubMed ID: 16121398)

  • 1. Cooperative effects in hydrogen-bonding of protein secondary structure elements: a systematic analysis of crystal data using Secbase.
    Koch O; Bocola M; Klebe G
    Proteins; 2005 Nov; 61(2):310-7. PubMed ID: 16121398
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Twist and shear in beta-sheets and beta-ribbons.
    Ho BK; Curmi PM
    J Mol Biol; 2002 Mar; 317(2):291-308. PubMed ID: 11902844
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Secbase: database module to retrieve secondary structure elements with ligand binding motifs.
    Koch O; Cole J; Block P; Klebe G
    J Chem Inf Model; 2009 Oct; 49(10):2388-402. PubMed ID: 19807134
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K; Ramakumar S
    Proteins; 2004 Sep; 56(4):768-81. PubMed ID: 15281129
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bader's electron density analysis of hydrogen bonding in secondary structural elements of protein.
    Parthasarathi R; Raman SS; Subramanian V; Ramasami T
    J Phys Chem A; 2007 Aug; 111(30):7141-8. PubMed ID: 17602540
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets.
    Yang AS; Honig B
    J Mol Biol; 1995 Sep; 252(3):366-76. PubMed ID: 7563057
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S; Saven JG
    Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures.
    Steiner T; Koellner G
    J Mol Biol; 2001 Jan; 305(3):535-57. PubMed ID: 11152611
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structure and stability of beta-pleated sheets.
    Perczel A; Gáspári Z; Csizmadia IG
    J Comput Chem; 2005 Aug; 26(11):1155-68. PubMed ID: 15952205
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M; Deupi X; Govaerts C; Pardo L
    Biophys J; 2002 Jun; 82(6):3207-13. PubMed ID: 12023245
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Single-site mutation and secondary structure stability: an isodesmic reaction approach. The case of unnatural amino acid mutagenesis Ala-->Lac.
    Cieplak AS; Sürmeli NB
    J Org Chem; 2004 May; 69(10):3250-61. PubMed ID: 15132529
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Contributions of NH...O and CH...O hydrogen bonds to the stability of beta-sheets in proteins.
    Scheiner S
    J Phys Chem B; 2006 Sep; 110(37):18670-9. PubMed ID: 16970498
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure and stability of short beta-peptide nanotubes: a non-natural representative of collagen?
    Czajlik A; Beke T; Bottoni A; Perczel A
    J Phys Chem B; 2008 Jul; 112(26):7956-66. PubMed ID: 18543867
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Crystal structure of a glutamate/aspartate binding protein complexed with a glutamate molecule: structural basis of ligand specificity at atomic resolution.
    Hu Y; Fan CP; Fu G; Zhu D; Jin Q; Wang DC
    J Mol Biol; 2008 Sep; 382(1):99-111. PubMed ID: 18640128
    [TBL] [Abstract][Full Text] [Related]  

  • 15. 3(10)-helices in proteins are parahelices.
    Enkhbayar P; Hikichi K; Osaki M; Kretsinger RH; Matsushima N
    Proteins; 2006 Aug; 64(3):691-9. PubMed ID: 16783793
    [TBL] [Abstract][Full Text] [Related]  

  • 16. C-H...O hydrogen bonds in beta-sheets.
    Fabiola GF; Krishnaswamy S; Nagarajan V; Pattabhi V
    Acta Crystallogr D Biol Crystallogr; 1997 May; 53(Pt 3):316-20. PubMed ID: 15299935
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Helices in peptoids of alpha- and beta-peptides.
    Baldauf C; Günther R; Hofmann HJ
    Phys Biol; 2006 Feb; 3(1):S1-9. PubMed ID: 16582460
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Crystallographic evidence for C alpha-H...O=C hydrogen bonds in a collagen triple helix.
    Bella J; Berman HM
    J Mol Biol; 1996 Dec; 264(4):734-42. PubMed ID: 8980682
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Flexibility of beta-sheets: principal component analysis of database protein structures.
    Emberly EG; Mukhopadhyay R; Tang C; Wingreen NS
    Proteins; 2004 Apr; 55(1):91-8. PubMed ID: 14997543
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Left-handed polyproline II helices commonly occur in globular proteins.
    Adzhubei AA; Sternberg MJ
    J Mol Biol; 1993 Jan; 229(2):472-93. PubMed ID: 8429558
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.