307 related articles for article (PubMed ID: 16122386)
1. Variation in structural location and amino acid conservation of functional sites in protein domain families.
Pils B; Copley RR; Schultz J
BMC Bioinformatics; 2005 Aug; 6():210. PubMed ID: 16122386
[TBL] [Abstract][Full Text] [Related]
2. Prediction of functional sites by analysis of sequence and structure conservation.
Panchenko AR; Kondrashov F; Bryant S
Protein Sci; 2004 Apr; 13(4):884-92. PubMed ID: 15010543
[TBL] [Abstract][Full Text] [Related]
3. Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures.
Gong S; Blundell TL
PLoS Comput Biol; 2008 Oct; 4(10):e1000179. PubMed ID: 18833291
[TBL] [Abstract][Full Text] [Related]
4. Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions.
Gunasekaran K; Hagler AT; Gierasch LM
Proteins; 2004 Feb; 54(2):179-94. PubMed ID: 14696180
[TBL] [Abstract][Full Text] [Related]
5. Domain-based small molecule binding site annotation.
Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
[TBL] [Abstract][Full Text] [Related]
6. Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways.
Rekha N; Machado SM; Narayanan C; Krupa A; Srinivasan N
Proteins; 2005 Feb; 58(2):339-53. PubMed ID: 15562516
[TBL] [Abstract][Full Text] [Related]
7. An evolutionary trace method defines binding surfaces common to protein families.
Lichtarge O; Bourne HR; Cohen FE
J Mol Biol; 1996 Mar; 257(2):342-58. PubMed ID: 8609628
[TBL] [Abstract][Full Text] [Related]
8. Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
Fernández D; Vendrell J; Avilés FX; Fernández-Recio J
Proteins; 2007 Jul; 68(1):131-44. PubMed ID: 17407161
[TBL] [Abstract][Full Text] [Related]
9. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
Wilson CA; Kreychman J; Gerstein M
J Mol Biol; 2000 Mar; 297(1):233-49. PubMed ID: 10704319
[TBL] [Abstract][Full Text] [Related]
10. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
[TBL] [Abstract][Full Text] [Related]
11. Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair.
Kim WK; Park J; Suh JK
Genome Inform; 2002; 13():42-50. PubMed ID: 14571373
[TBL] [Abstract][Full Text] [Related]
12. Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
Chelliah V; Chen L; Blundell TL; Lovell SC
J Mol Biol; 2004 Oct; 342(5):1487-504. PubMed ID: 15364576
[TBL] [Abstract][Full Text] [Related]
13. Prediction of Ras-effector interactions using position energy matrices.
Kiel C; Serrano L
Bioinformatics; 2007 Sep; 23(17):2226-30. PubMed ID: 17599936
[TBL] [Abstract][Full Text] [Related]
14. Protein simple sequence conservation.
Sim KL; Creamer TP
Proteins; 2004 Mar; 54(4):629-38. PubMed ID: 14997559
[TBL] [Abstract][Full Text] [Related]
15. Prediction of functional sites in proteins using conserved functional group analysis.
Innis CA; Anand AP; Sowdhamini R
J Mol Biol; 2004 Apr; 337(4):1053-68. PubMed ID: 15033369
[TBL] [Abstract][Full Text] [Related]
16. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
17. The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes.
Kiel C; Serrano L
J Mol Biol; 2006 Jan; 355(4):821-44. PubMed ID: 16310215
[TBL] [Abstract][Full Text] [Related]
18. Evolution of function in protein superfamilies, from a structural perspective.
Todd AE; Orengo CA; Thornton JM
J Mol Biol; 2001 Apr; 307(4):1113-43. PubMed ID: 11286560
[TBL] [Abstract][Full Text] [Related]
19. Structure is three to ten times more conserved than sequence--a study of structural response in protein cores.
Illergård K; Ardell DH; Elofsson A
Proteins; 2009 Nov; 77(3):499-508. PubMed ID: 19507241
[TBL] [Abstract][Full Text] [Related]
20. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
Larson SM; Di Nardo AA; Davidson AR
J Mol Biol; 2000 Oct; 303(3):433-46. PubMed ID: 11031119
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]