158 related articles for article (PubMed ID: 16146579)
1. GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.
Standley DM; Toh H; Nakamura H
BMC Bioinformatics; 2005 Sep; 6():221. PubMed ID: 16146579
[TBL] [Abstract][Full Text] [Related]
2. Detecting local structural similarity in proteins by maximizing number of equivalent residues.
Standley DM; Toh H; Nakamura H
Proteins; 2004 Nov; 57(2):381-91. PubMed ID: 15340925
[TBL] [Abstract][Full Text] [Related]
3. The iRMSD: a local measure of sequence alignment accuracy using structural information.
Armougom F; Moretti S; Keduas V; Notredame C
Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
[TBL] [Abstract][Full Text] [Related]
4. MUSTANG: a multiple structural alignment algorithm.
Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
[TBL] [Abstract][Full Text] [Related]
5. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
6. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
7. CAALIGN: a program for pairwise and multiple protein-structure alignment.
Oldfield TJ
Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
[TBL] [Abstract][Full Text] [Related]
8. SANA: an algorithm for sequential and non-sequential protein structure alignment.
Wang L; Wu LY; Wang Y; Zhang XS; Chen L
Amino Acids; 2010 Jul; 39(2):417-25. PubMed ID: 20127263
[TBL] [Abstract][Full Text] [Related]
9. Strategies of non-sequential protein structure alignments.
Guerler A; Knapp EW
Genome Inform; 2010 Jan; 22():21-9. PubMed ID: 20238416
[TBL] [Abstract][Full Text] [Related]
10. Algorithms for optimal protein structure alignment.
Poleksic A
Bioinformatics; 2009 Nov; 25(21):2751-6. PubMed ID: 19734152
[TBL] [Abstract][Full Text] [Related]
11. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.
Russell RB; Barton GJ
Proteins; 1992 Oct; 14(2):309-23. PubMed ID: 1409577
[TBL] [Abstract][Full Text] [Related]
12. Towards optimal alignment of protein structure distance matrices.
Wohlers I; Domingues FS; Klau GW
Bioinformatics; 2010 Sep; 26(18):2273-80. PubMed ID: 20639543
[TBL] [Abstract][Full Text] [Related]
13. An iterative refinement algorithm for consistency based multiple structural alignment methods.
Chen Y; Crippen GM
Bioinformatics; 2006 Sep; 22(17):2087-93. PubMed ID: 16809393
[TBL] [Abstract][Full Text] [Related]
14. Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins.
OchagavĂa ME; Wodak S
Proteins; 2004 May; 55(2):436-54. PubMed ID: 15048834
[TBL] [Abstract][Full Text] [Related]
15. Comparison of proteins based on segments structural similarity.
Plewczynski D; Pas J; Von Grotthuss M; Rychlewski L
Acta Biochim Pol; 2004; 51(1):161-72. PubMed ID: 15094837
[TBL] [Abstract][Full Text] [Related]
16. VISSA: a program to visualize structural features from structure sequence alignment.
Li W; Godzik A
Bioinformatics; 2006 Apr; 22(7):887-8. PubMed ID: 16434438
[TBL] [Abstract][Full Text] [Related]
17. Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H; Tabei Y; Kin T; Asai K
Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
[TBL] [Abstract][Full Text] [Related]
18. Variable gap penalty for protein sequence-structure alignment.
Madhusudhan MS; Marti-Renom MA; Sanchez R; Sali A
Protein Eng Des Sel; 2006 Mar; 19(3):129-33. PubMed ID: 16423846
[TBL] [Abstract][Full Text] [Related]
19. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
20. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]