BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 16155127)

  • 1. Ensemble versus single-molecule protein unfolding.
    Day R; Daggett V
    Proc Natl Acad Sci U S A; 2005 Sep; 102(38):13445-50. PubMed ID: 16155127
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.
    Li A; Daggett V
    J Mol Biol; 1996 Mar; 257(2):412-29. PubMed ID: 8609633
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Validation of protein-unfolding transition states identified in molecular dynamics simulations.
    Daggett V
    Biochem Soc Symp; 2001; (68):83-93. PubMed ID: 11573349
    [TBL] [Abstract][Full Text] [Related]  

  • 4. "New view" of protein folding reconciled with the old through multiple unfolding simulations.
    Lazaridis T; Karplus M
    Science; 1997 Dec; 278(5345):1928-31. PubMed ID: 9395391
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water.
    Alonso DO; Daggett V
    J Mol Biol; 1995 Mar; 247(3):501-20. PubMed ID: 7714903
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Increasing temperature accelerates protein unfolding without changing the pathway of unfolding.
    Day R; Bennion BJ; Ham S; Daggett V
    J Mol Biol; 2002 Sep; 322(1):189-203. PubMed ID: 12215424
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles.
    Kazmirski SL; Li A; Daggett V
    J Mol Biol; 1999 Jul; 290(1):283-304. PubMed ID: 10388573
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution.
    Kazmirski SL; Wong KB; Freund SM; Tan YJ; Fersht AR; Daggett V
    Proc Natl Acad Sci U S A; 2001 Apr; 98(8):4349-54. PubMed ID: 11274353
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR; Maynard AJ; Searle MS
    J Mol Biol; 1999 Oct; 292(5):1051-69. PubMed ID: 10512702
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Equilibrium study of protein denaturation by urea.
    Canchi DR; Paschek D; García AE
    J Am Chem Soc; 2010 Feb; 132(7):2338-44. PubMed ID: 20121105
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural stabilization of a rigid beta-sheet cluster of fucosylated proteinase inhibitor PMPC (Pars intercerebralis major peptide C) against thermal denaturation: An unfolding molecular dynamics simulation study.
    Choi Y; Kim H; Lee JH; Park S; Jeong K; Jung S
    J Mol Graph Model; 2010 Feb; 28(6):487-94. PubMed ID: 20053575
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computer simulations of protein folding by targeted molecular dynamics.
    Ferrara P; Apostolakis J; Caflisch A
    Proteins; 2000 May; 39(3):252-60. PubMed ID: 10737947
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ; Jones RM; van Gunsteren WF
    Proteins; 2005 Feb; 58(2):439-49. PubMed ID: 15558602
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Role of water on unfolding kinetics of helical peptides studied by molecular dynamics simulations.
    Doruker P; Bahar I
    Biophys J; 1997 Jun; 72(6):2445-56. PubMed ID: 9168021
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G; García AE; Garde S
    Proteins; 2001 Jan; 42(1):77-84. PubMed ID: 11093262
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Thermal unfolding simulations of a multimeric protein--transition state and unfolding pathways.
    Duan J; Nilsson L
    Proteins; 2005 May; 59(2):170-82. PubMed ID: 15723359
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin.
    Caves LS; Evanseck JD; Karplus M
    Protein Sci; 1998 Mar; 7(3):649-66. PubMed ID: 9541397
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation.
    Ferguson N; Day R; Johnson CM; Allen MD; Daggett V; Fersht AR
    J Mol Biol; 2005 Apr; 347(4):855-70. PubMed ID: 15769475
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE; Hummer G
    Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2.
    Li A; Daggett V
    Proc Natl Acad Sci U S A; 1994 Oct; 91(22):10430-4. PubMed ID: 7937969
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.