BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 16159912)

  • 1. BADASP: predicting functional specificity in protein families using ancestral sequences.
    Edwards RJ; Shields DC
    Bioinformatics; 2005 Nov; 21(22):4190-1. PubMed ID: 16159912
    [TBL] [Abstract][Full Text] [Related]  

  • 2. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.
    Raghava GP; Han JH
    BMC Bioinformatics; 2005 Mar; 6():59. PubMed ID: 15773999
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SplitTester: software to identify domains responsible for functional divergence in protein family.
    Gao X; Vander Velden KA; Voytas DF; Gu X
    BMC Bioinformatics; 2005 Jun; 6():137. PubMed ID: 15929795
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CAPS: coevolution analysis using protein sequences.
    Fares MA; McNally D
    Bioinformatics; 2006 Nov; 22(22):2821-2. PubMed ID: 17005535
    [TBL] [Abstract][Full Text] [Related]  

  • 6. [Computational method for prediction of protein functional sites using specificity determinants].
    Kalinina OV; Rassel RB; Rakhmaninova AB; Gel'fand MS
    Mol Biol (Mosk); 2007; 41(1):151-62. PubMed ID: 17380902
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient functional clustering of protein sequences using the Dirichlet process.
    Brown DP
    Bioinformatics; 2008 Aug; 24(16):1765-71. PubMed ID: 18511467
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
    Pei J; Cai W; Kinch LN; Grishin NV
    Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
    La D; Livesay DR
    BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
    [TBL] [Abstract][Full Text] [Related]  

  • 10. LogoBar: bar graph visualization of protein logos with gaps.
    Pérez-Bercoff A; Koch J; Bürglin TR
    Bioinformatics; 2006 Jan; 22(1):112-4. PubMed ID: 16269415
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An update of DIVERGE software for functional divergence analysis of protein family.
    Gu X; Zou Y; Su Z; Huang W; Zhou Z; Arendsee Z; Zeng Y
    Mol Biol Evol; 2013 Jul; 30(7):1713-9. PubMed ID: 23589455
    [TBL] [Abstract][Full Text] [Related]  

  • 12. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phylogeny-independent detection of functional residues.
    Pazos F; Rausell A; Valencia A
    Bioinformatics; 2006 Jun; 22(12):1440-8. PubMed ID: 16551661
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J; Deremble C; Carbone A
    Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reconstruction of ancestral protein sequences and its applications.
    Cai W; Pei J; Grishin NV
    BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SPRINT: side-chain prediction inference toolbox for multistate protein design.
    Fromer M; Yanover C; Harel A; Shachar O; Weiss Y; Linial M
    Bioinformatics; 2010 Oct; 26(19):2466-7. PubMed ID: 20685957
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.
    Stern A; Doron-Faigenboim A; Erez E; Martz E; Bacharach E; Pupko T
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W506-11. PubMed ID: 17586822
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Vestige: maximum likelihood phylogenetic footprinting.
    Wakefield MJ; Maxwell P; Huttley GA
    BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ET viewer: an application for predicting and visualizing functional sites in protein structures.
    Morgan DH; Kristensen DM; Mittelman D; Lichtarge O
    Bioinformatics; 2006 Aug; 22(16):2049-50. PubMed ID: 16809388
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.