961 related articles for article (PubMed ID: 16171364)
1. Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays.
Binder H; Preibisch S; Kirsten T
Langmuir; 2005 Sep; 21(20):9287-302. PubMed ID: 16171364
[TBL] [Abstract][Full Text] [Related]
2. Specific and nonspecific hybridization of oligonucleotide probes on microarrays.
Binder H; Preibisch S
Biophys J; 2005 Jul; 89(1):337-52. PubMed ID: 15834006
[TBL] [Abstract][Full Text] [Related]
3. Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.
Wang Y; Miao ZH; Pommier Y; Kawasaki ES; Player A
Bioinformatics; 2007 Aug; 23(16):2088-95. PubMed ID: 17553856
[TBL] [Abstract][Full Text] [Related]
4. Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.
Binder H; Brücker J; Burden CJ
J Phys Chem B; 2009 Mar; 113(9):2874-95. PubMed ID: 19708217
[TBL] [Abstract][Full Text] [Related]
5. Sequence dependence of cross-hybridization on short oligo microarrays.
Wu C; Carta R; Zhang L
Nucleic Acids Res; 2005 May; 33(9):e84. PubMed ID: 15914663
[TBL] [Abstract][Full Text] [Related]
6. Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays.
Furusawa C; Ono N; Suzuki S; Agata T; Shimizu H; Yomo T
Bioinformatics; 2009 Jan; 25(1):36-41. PubMed ID: 18977779
[TBL] [Abstract][Full Text] [Related]
7. Understanding the physics of oligonucleotide microarrays: the Affymetrix spike-in data reanalysed.
Burden CJ
Phys Biol; 2008 Mar; 5(1):016004. PubMed ID: 18369276
[TBL] [Abstract][Full Text] [Related]
8. Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples.
Calevro F; Charles H; Reymond N; Dugas V; Cloarec JP; Bernillon J; Rahbé Y; Febvay G; Fayard JM
J Microbiol Methods; 2004 May; 57(2):207-18. PubMed ID: 15063061
[TBL] [Abstract][Full Text] [Related]
9. Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations.
Zhang L; Hurek T; Reinhold-Hurek B
Nucleic Acids Res; 2005 Oct; 33(19):e166. PubMed ID: 16257977
[TBL] [Abstract][Full Text] [Related]
10. Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays.
Letowski J; Brousseau R; Masson L
J Microbiol Methods; 2004 May; 57(2):269-78. PubMed ID: 15063067
[TBL] [Abstract][Full Text] [Related]
11. Mismatch formation in solution and on DNA microarrays: how modified nucleosides can overcome shortcomings of imperfect hybridization caused by oligonucleotide composition and base pairing.
Seela F; Budow S
Mol Biosyst; 2008 Mar; 4(3):232-45. PubMed ID: 18437266
[TBL] [Abstract][Full Text] [Related]
12. Analysis of the factors affecting the accuracy of detection for single base alterations by oligonucleotide microarray.
Liu S; Li Y; Fu X; Qiu M; Jiang B; Wu H; Li R; Mao Y; Xie Y
Exp Mol Med; 2005 Apr; 37(2):71-7. PubMed ID: 15886519
[TBL] [Abstract][Full Text] [Related]
13. Use of hybridization melting kinetics for detecting Phytophthora species using three-dimensional microarrays: demonstration of a novel concept for the differentiation of detection targets.
Anderson N; Szemes M; O'Brien P; de Weerdt M; Schoen C; Boender P; Bonants P
Mycol Res; 2006 Jun; 110(Pt 6):664-71. PubMed ID: 16769210
[TBL] [Abstract][Full Text] [Related]
14. Isostable DNA.
Ahlborn C; Siegmund K; Richert C
J Am Chem Soc; 2007 Dec; 129(49):15218-32. PubMed ID: 17999503
[TBL] [Abstract][Full Text] [Related]
15. ChipCheck--a program predicting total hybridization equilibria for DNA binding to small oligonucleotide microarrays.
Siegmund KH; Steiner UE; Richert C
J Chem Inf Comput Sci; 2003; 43(6):2153-62. PubMed ID: 14632467
[TBL] [Abstract][Full Text] [Related]
16. Evaluating single-base-pair discriminating capability of planar oligonucleotide microchips using a non-equilibrium dissociation approach.
Li ES; Ng JK; Wu JH; Liu WT
Environ Microbiol; 2004 Nov; 6(11):1197-202. PubMed ID: 15479252
[TBL] [Abstract][Full Text] [Related]
17. A model of molecular interactions on short oligonucleotide microarrays.
Zhang L; Miles MF; Aldape KD
Nat Biotechnol; 2003 Jul; 21(7):818-21. PubMed ID: 12794640
[TBL] [Abstract][Full Text] [Related]
18. Transcript mapping with high-density oligonucleotide tiling arrays.
Huber W; Toedling J; Steinmetz LM
Bioinformatics; 2006 Aug; 22(16):1963-70. PubMed ID: 16787969
[TBL] [Abstract][Full Text] [Related]
19. Simultaneous quantification of multiple nucleic acid targets in complex rRNA mixtures using high density microarrays and nonspecific hybridization as a source of information.
Pozhitkov AE; Nies G; Kleinhenz B; Tautz D; Noble PA
J Microbiol Methods; 2008 Sep; 75(1):92-102. PubMed ID: 18579240
[TBL] [Abstract][Full Text] [Related]
20. Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.
Muller J; Mehlen A; Vetter G; Yatskou M; Muller A; Chalmel F; Poch O; Friederich E; Vallar L
BMC Genomics; 2007 Aug; 8():294. PubMed ID: 17727702
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
