109 related articles for article (PubMed ID: 16181729)
1. Detection of coregulation in differential gene expression profiles.
Perco P; Kainz A; Mayer G; Lukas A; Oberbauer R; Mayer B
Biosystems; 2005 Dec; 82(3):235-47. PubMed ID: 16181729
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY; Kim Y
BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
[TBL] [Abstract][Full Text] [Related]
3. More robust detection of motifs in coexpressed genes by using phylogenetic information.
Monsieurs P; Thijs G; Fadda AA; De Keersmaecker SC; Vanderleyden J; De Moor B; Marchal K
BMC Bioinformatics; 2006 Mar; 7():160. PubMed ID: 16549017
[TBL] [Abstract][Full Text] [Related]
4. A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis.
Geisler M; Kleczkowski LA; Karpinski S
Plant J; 2006 Feb; 45(3):384-98. PubMed ID: 16412085
[TBL] [Abstract][Full Text] [Related]
5. Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.
Vermeirssen V; Joshi A; Michoel T; Bonnet E; Casneuf T; Van de Peer Y
Mol Biosyst; 2009 Dec; 5(12):1817-30. PubMed ID: 19763340
[TBL] [Abstract][Full Text] [Related]
6. Learning regulatory programs that accurately predict differential expression with MEDUSA.
Kundaje A; Lianoglou S; Li X; Quigley D; Arias M; Wiggins CH; Zhang L; Leslie C
Ann N Y Acad Sci; 2007 Dec; 1115():178-202. PubMed ID: 17934055
[TBL] [Abstract][Full Text] [Related]
7. Condition-specific coregulation with cis-regulatory motifs and modules in the mouse genome.
Choi D; Fang Y; Mathers WD
Genomics; 2006 Apr; 87(4):500-8. PubMed ID: 16431075
[TBL] [Abstract][Full Text] [Related]
8. Transforming omics data into context: bioinformatics on genomics and proteomics raw data.
Perco P; Rapberger R; Siehs C; Lukas A; Oberbauer R; Mayer G; Mayer B
Electrophoresis; 2006 Jul; 27(13):2659-75. PubMed ID: 16739231
[TBL] [Abstract][Full Text] [Related]
9. Motif detection in Arabidopsis: correlation with gene expression data.
Janaki C; Joshi RR
In Silico Biol; 2004; 4(2):149-61. PubMed ID: 15107020
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide analysis of factors regulating gene expression in liver.
Teufel A; Weinmann A; Krupp M; Budinger M; Galle PR
Gene; 2007 Mar; 389(2):114-21. PubMed ID: 17174484
[TBL] [Abstract][Full Text] [Related]
11. Statistical methods in integrative analysis for gene regulatory modules.
Zeng L; Wu J; Xie J
Stat Appl Genet Mol Biol; 2008; 7(1):Article 28. PubMed ID: 18976224
[TBL] [Abstract][Full Text] [Related]
12. A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks.
Yugi K; Nakayama Y; Kojima S; Kitayama T; Tomita M
BMC Bioinformatics; 2005 Dec; 6():299. PubMed ID: 16351711
[TBL] [Abstract][Full Text] [Related]
13. Integrating genomic data to predict transcription factor binding.
Holloway DT; Kon M; DeLisi C
Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
[TBL] [Abstract][Full Text] [Related]
14. Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.
Zhong S; Xie D
Artif Intell Med; 2007 Oct; 41(2):105-15. PubMed ID: 17913480
[TBL] [Abstract][Full Text] [Related]
15. FactorY, a bioinformatic resource for genome-wide promoter analysis.
Guruceaga E; Segura V; Corrales FJ; Rubio A
Comput Biol Med; 2009 Apr; 39(4):385-7. PubMed ID: 19272592
[TBL] [Abstract][Full Text] [Related]
16. A cis-regulatory logic simulator.
Zeigler RD; Gertz J; Cohen BA
BMC Bioinformatics; 2007 Jul; 8():272. PubMed ID: 17662143
[TBL] [Abstract][Full Text] [Related]
17. Using simple rules on presence and positioning of motifs for promoter structure modeling and tissue-specific expression prediction.
Vandenbon A; Nakai K
Genome Inform; 2008; 21():188-99. PubMed ID: 19425158
[TBL] [Abstract][Full Text] [Related]
18. STOP: searching for transcription factor motifs using gene expression.
Hertzberg L; Izraeli S; Domany E
Bioinformatics; 2007 Jul; 23(14):1737-43. PubMed ID: 17488754
[TBL] [Abstract][Full Text] [Related]
19. Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.
Hirose O; Yoshida R; Imoto S; Yamaguchi R; Higuchi T; Charnock-Jones DS; Print C; Miyano S
Bioinformatics; 2008 Apr; 24(7):932-42. PubMed ID: 18292116
[TBL] [Abstract][Full Text] [Related]
20. Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding.
Mullapudi N; Lancto CA; Abrahamsen MS; Kissinger JC
BMC Genomics; 2007 Jan; 8():13. PubMed ID: 17212834
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
