BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

589 related articles for article (PubMed ID: 16204087)

  • 1. Computational discovery of transcriptional regulatory rules.
    Pham TH; Clemente JC; Satou K; Ho TB
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii101-7. PubMed ID: 16204087
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predicting genetic regulatory response using classification.
    Middendorf M; Kundaje A; Wiggins C; Freund Y; Leslie C
    Bioinformatics; 2004 Aug; 20 Suppl 1():i232-40. PubMed ID: 15262804
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational identification of combinatorial regulation and transcription factor binding sites.
    Ryu T; Kim Y; Kim DW; Lee D
    Biotechnol Bioeng; 2007 Aug; 97(6):1594-602. PubMed ID: 17252601
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
    Yan X; Mehan MR; Huang Y; Waterman MS; Yu PS; Zhou XJ
    Bioinformatics; 2007 Jul; 23(13):i577-86. PubMed ID: 17646346
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational discovery of gene modules and regulatory networks.
    Bar-Joseph Z; Gerber GK; Lee TI; Rinaldi NJ; Yoo JY; Robert F; Gordon DB; Fraenkel E; Jaakkola TS; Young RA; Gifford DK
    Nat Biotechnol; 2003 Nov; 21(11):1337-42. PubMed ID: 14555958
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integrating genomic data to predict transcription factor binding.
    Holloway DT; Kon M; DeLisi C
    Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Regulatory motif finding by logic regression.
    Keles S; van der Laan MJ; Vulpe C
    Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using simple rules on presence and positioning of motifs for promoter structure modeling and tissue-specific expression prediction.
    Vandenbon A; Nakai K
    Genome Inform; 2008; 21():188-99. PubMed ID: 19425158
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY; Kim Y
    BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering.
    Leyfer D; Weng Z
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii197-203. PubMed ID: 16204103
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A cis-regulatory logic simulator.
    Zeigler RD; Gertz J; Cohen BA
    BMC Bioinformatics; 2007 Jul; 8():272. PubMed ID: 17662143
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Regression trees for regulatory element identification.
    Phuong TM; Lee D; Lee KH
    Bioinformatics; 2004 Mar; 20(5):750-7. PubMed ID: 14751992
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Statistical methods in integrative analysis for gene regulatory modules.
    Zeng L; Wu J; Xie J
    Stat Appl Genet Mol Biol; 2008; 7(1):Article 28. PubMed ID: 18976224
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extraction of transcription regulatory signals from genome-wide DNA-protein interaction data.
    Garten Y; Kaplan S; Pilpel Y
    Nucleic Acids Res; 2005; 33(2):605-15. PubMed ID: 15684410
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Nucleotide variation of regulatory motifs may lead to distinct expression patterns.
    Segal L; Lapidot M; Solan Z; Ruppin E; Pilpel Y; Horn D
    Bioinformatics; 2007 Jul; 23(13):i440-9. PubMed ID: 17646329
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-wide analysis of factors regulating gene expression in liver.
    Teufel A; Weinmann A; Krupp M; Budinger M; Galle PR
    Gene; 2007 Mar; 389(2):114-21. PubMed ID: 17174484
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting transcription factor binding sites using local over-representation and comparative genomics.
    Defrance M; Touzet H
    BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mining putative regulatory elements in promoter regions of Saccharomyces cerevisiae.
    Horng JT; Huang HD; Huang SL; Yan UC; Chang YC
    In Silico Biol; 2002; 2(3):263-73. PubMed ID: 12542412
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Some microsatellites may act as novel polymorphic cis-regulatory elements through transcription factor binding.
    Iglesias AR; Kindlund E; Tammi M; Wadelius C
    Gene; 2004 Oct; 341():149-65. PubMed ID: 15474298
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes.
    Horsman S; Moorhouse MJ; de Jager VC; van der Spek P; Grosveld F; Strouboulis J; Katsantoni EZ
    BMC Bioinformatics; 2006 Mar; 7():120. PubMed ID: 16524462
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 30.