210 related articles for article (PubMed ID: 16204130)
1. Non-coding RNAs in Ciona intestinalis.
Missal K; Rose D; Stadler PF
Bioinformatics; 2005 Sep; 21 Suppl 2():ii77-8. PubMed ID: 16204130
[TBL] [Abstract][Full Text] [Related]
2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
[TBL] [Abstract][Full Text] [Related]
3. Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.
Missal K; Zhu X; Rose D; Deng W; Skogerbø G; Chen R; Stadler PF
J Exp Zool B Mol Dev Evol; 2006 Jul; 306(4):379-92. PubMed ID: 16425273
[TBL] [Abstract][Full Text] [Related]
4. Into the heart of darkness: large-scale clustering of human non-coding DNA.
Bejerano G; Haussler D; Blanchette M
Bioinformatics; 2004 Aug; 20 Suppl 1():i40-8. PubMed ID: 15262779
[TBL] [Abstract][Full Text] [Related]
5. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function.
Pang KC; Frith MC; Mattick JS
Trends Genet; 2006 Jan; 22(1):1-5. PubMed ID: 16290135
[TBL] [Abstract][Full Text] [Related]
6. A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.
Babak T; Blencowe BJ; Hughes TR
BMC Genomics; 2005 Aug; 6():104. PubMed ID: 16083503
[TBL] [Abstract][Full Text] [Related]
7. Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance.
Johnson DS; Davidson B; Brown CD; Smith WC; Sidow A
Genome Res; 2004 Dec; 14(12):2448-56. PubMed ID: 15545496
[TBL] [Abstract][Full Text] [Related]
8. Comparative genomics reveals unusually long motifs in mammalian genomes.
Jones NC; Pevzner PA
Bioinformatics; 2006 Jul; 22(14):e236-42. PubMed ID: 16873477
[TBL] [Abstract][Full Text] [Related]
9. Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy.
Weinberg Z; Ruzzo WL
Bioinformatics; 2004 Aug; 20 Suppl 1():i334-41. PubMed ID: 15262817
[TBL] [Abstract][Full Text] [Related]
10. A screen for conserved sequences with biased base composition identifies noncoding RNAs in the A-T rich genome of Plasmodium falciparum.
Upadhyay R; Bawankar P; Malhotra D; Patankar S
Mol Biochem Parasitol; 2005 Dec; 144(2):149-58. PubMed ID: 16183147
[TBL] [Abstract][Full Text] [Related]
11. Loss of ancestral genes in the genomic evolution of Ciona intestinalis.
Hughes AL; Friedman R
Evol Dev; 2005; 7(3):196-200. PubMed ID: 15876192
[TBL] [Abstract][Full Text] [Related]
12. Comparative genomics identifies a cis-regulatory module that activates transcription in specific subsets of neurons in Ciona intestinalis larvae.
Yoshida R; Horie T; Tsuda M; Kusakabe TG
Dev Growth Differ; 2007 Oct; 49(8):657-67. PubMed ID: 17711474
[TBL] [Abstract][Full Text] [Related]
13. Sequence and structure analysis of noncoding RNAs.
Washietl S
Methods Mol Biol; 2010; 609():285-306. PubMed ID: 20221926
[TBL] [Abstract][Full Text] [Related]
14. Three insulin-relaxin-like genes in Ciona intestinalis.
Olinski RP; Dahlberg C; Thorndyke M; Hallböök F
Peptides; 2006 Nov; 27(11):2535-46. PubMed ID: 16920224
[TBL] [Abstract][Full Text] [Related]
15. Comparative genomics approach toward critical determinants for the imprinting of an evolutionarily conserved gene Impact.
Okamura K; Sakaki Y; Ito T
Biochem Biophys Res Commun; 2005 Apr; 329(3):824-30. PubMed ID: 15752730
[TBL] [Abstract][Full Text] [Related]
16. Identification and characterization of human non-coding RNAs with tissue-specific expression.
Sasaki YT; Sano M; Ideue T; Kin T; Asai K; Hirose T
Biochem Biophys Res Commun; 2007 Jun; 357(4):991-6. PubMed ID: 17451645
[TBL] [Abstract][Full Text] [Related]
17. OMA Browser--exploring orthologous relations across 352 complete genomes.
Schneider A; Dessimoz C; Gonnet GH
Bioinformatics; 2007 Aug; 23(16):2180-2. PubMed ID: 17545180
[TBL] [Abstract][Full Text] [Related]
18. NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.
Rose D; Hertel J; Reiche K; Stadler PF; Hackermüller J
Genomics; 2008 Jul; 92(1):65-74. PubMed ID: 18511233
[TBL] [Abstract][Full Text] [Related]
19. Evolutionary simulations to detect functional lineage-specific genes.
Dupanloup I; Kaessmann H
Bioinformatics; 2006 Aug; 22(15):1815-22. PubMed ID: 16766551
[TBL] [Abstract][Full Text] [Related]
20. SnoReport: computational identification of snoRNAs with unknown targets.
Hertel J; Hofacker IL; Stadler PF
Bioinformatics; 2008 Jan; 24(2):158-64. PubMed ID: 17895272
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]