502 related articles for article (PubMed ID: 16211068)
1. Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A; Tompa M
Nat Biotechnol; 2005 Oct; 23(10):1249-56. PubMed ID: 16211068
[TBL] [Abstract][Full Text] [Related]
2. Phylogeny based discovery of regulatory elements.
Gertz J; Fay JC; Cohen BA
BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
[TBL] [Abstract][Full Text] [Related]
3. Comparative genomics reveals unusually long motifs in mammalian genomes.
Jones NC; Pevzner PA
Bioinformatics; 2006 Jul; 22(14):e236-42. PubMed ID: 16873477
[TBL] [Abstract][Full Text] [Related]
4. Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.
Premzl M; Gready JE; Jermiin LS; Simonic T; Marshall Graves JA
Mol Biol Evol; 2004 Dec; 21(12):2210-31. PubMed ID: 15342797
[TBL] [Abstract][Full Text] [Related]
5. Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes.
Margulies EH; Birney E
Nat Rev Genet; 2008 Apr; 9(4):303-13. PubMed ID: 18347593
[TBL] [Abstract][Full Text] [Related]
6. Predicting transcription factor binding sites using local over-representation and comparative genomics.
Defrance M; Touzet H
BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
[TBL] [Abstract][Full Text] [Related]
7. Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs.
Mao L; Zheng WJ
BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S21. PubMed ID: 17217514
[TBL] [Abstract][Full Text] [Related]
8. PLATCOM: a Platform for Computational Comparative Genomics.
Choi K; Ma Y; Choi JH; Kim S
Bioinformatics; 2005 May; 21(10):2514-6. PubMed ID: 15731206
[TBL] [Abstract][Full Text] [Related]
9. OMA Browser--exploring orthologous relations across 352 complete genomes.
Schneider A; Dessimoz C; Gonnet GH
Bioinformatics; 2007 Aug; 23(16):2180-2. PubMed ID: 17545180
[TBL] [Abstract][Full Text] [Related]
10. Discovering and detecting transposable elements in genome sequences.
Bergman CM; Quesneville H
Brief Bioinform; 2007 Nov; 8(6):382-92. PubMed ID: 17932080
[TBL] [Abstract][Full Text] [Related]
11. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
Pierstorff N; Bergman CM; Wiehe T
Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
[TBL] [Abstract][Full Text] [Related]
12. Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
Nardone J; Lee DU; Ansel KM; Rao A
Nat Immunol; 2004 Aug; 5(8):768-74. PubMed ID: 15282556
[TBL] [Abstract][Full Text] [Related]
13. How does DNA sequence motif discovery work?
D'haeseleer P
Nat Biotechnol; 2006 Aug; 24(8):959-61. PubMed ID: 16900144
[No Abstract] [Full Text] [Related]
14. Comparative genomics in vertebrate evolution and development.
Amemiya CT; Gomez-Chiarri M
J Exp Zool A Comp Exp Biol; 2006 Sep; 305(9):672-82. PubMed ID: 16902957
[TBL] [Abstract][Full Text] [Related]
15. The relative value of operon predictions.
Brouwer RW; Kuipers OP; van Hijum SA
Brief Bioinform; 2008 Sep; 9(5):367-75. PubMed ID: 18420711
[TBL] [Abstract][Full Text] [Related]
16. MotifCut: regulatory motifs finding with maximum density subgraphs.
Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
[TBL] [Abstract][Full Text] [Related]
17. A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas.
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
Bioinformatics; 2005 May; 21(9):1789-96. PubMed ID: 15699025
[TBL] [Abstract][Full Text] [Related]
18. Computational approaches to finding and analyzing cis-regulatory elements.
Brown CT
Methods Cell Biol; 2008; 87():337-65. PubMed ID: 18485306
[TBL] [Abstract][Full Text] [Related]
19. GARD: a genetic algorithm for recombination detection.
Kosakovsky Pond SL; Posada D; Gravenor MB; Woelk CH; Frost SD
Bioinformatics; 2006 Dec; 22(24):3096-8. PubMed ID: 17110367
[TBL] [Abstract][Full Text] [Related]
20. Dcode.org anthology of comparative genomic tools.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
