142 related articles for article (PubMed ID: 16218946)
1. Identifying remote protein homologs by network propagation.
Noble WS; Kuang R; Leslie C; Weston J
FEBS J; 2005 Oct; 272(20):5119-28. PubMed ID: 16218946
[TBL] [Abstract][Full Text] [Related]
2. RANKPROP: a web server for protein remote homology detection.
Melvin I; Weston J; Leslie C; Noble WS
Bioinformatics; 2009 Jan; 25(1):121-2. PubMed ID: 18990723
[TBL] [Abstract][Full Text] [Related]
3. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
Agrawal A; Huang X
Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
[TBL] [Abstract][Full Text] [Related]
4. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
Zhou H; Zhou Y
Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
[TBL] [Abstract][Full Text] [Related]
5. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
Stevens FJ
J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
[TBL] [Abstract][Full Text] [Related]
6. QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.
Suhrer SJ; Gruber M; Sippl MJ
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W411-5. PubMed ID: 17478501
[TBL] [Abstract][Full Text] [Related]
7. Database similarity searches.
Plewniak F
Methods Mol Biol; 2008; 484():361-78. PubMed ID: 18592192
[TBL] [Abstract][Full Text] [Related]
8. YAKUSA: a fast structural database scanning method.
Carpentier M; Brouillet S; Pothier J
Proteins; 2005 Oct; 61(1):137-51. PubMed ID: 16049912
[TBL] [Abstract][Full Text] [Related]
9. MUSTANG: a multiple structural alignment algorithm.
Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
[TBL] [Abstract][Full Text] [Related]
10. A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search.
Garg A; Raghava GP
In Silico Biol; 2008; 8(2):129-40. PubMed ID: 18928201
[TBL] [Abstract][Full Text] [Related]
11. COPid: composition based protein identification.
Kumar M; Thakur V; Raghava GP
In Silico Biol; 2008; 8(2):121-8. PubMed ID: 18928200
[TBL] [Abstract][Full Text] [Related]
12. Inferring function from homology.
Emes RD
Methods Mol Biol; 2008; 453():149-68. PubMed ID: 18712301
[TBL] [Abstract][Full Text] [Related]
13. Searching protein 3-D structures for optimal structure alignment using intelligent algorithms and data structures.
Novosád T; Snášel V; Abraham A; Yang JY
IEEE Trans Inf Technol Biomed; 2010 Nov; 14(6):1378-86. PubMed ID: 20876026
[TBL] [Abstract][Full Text] [Related]
14. Parallelisation of the blast algorithm.
Qi Y; Lin F
Cell Mol Biol Lett; 2005; 10(2):281-5. PubMed ID: 16010293
[TBL] [Abstract][Full Text] [Related]
15. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
Kundrotas PJ; Lensink MF; Alexov E
Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239
[TBL] [Abstract][Full Text] [Related]
16. Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space.
Contreras-Moreira B; Fitzjohn PW; Offman M; Smith GR; Bates PA
Proteins; 2003; 53 Suppl 6():424-9. PubMed ID: 14579331
[TBL] [Abstract][Full Text] [Related]
17. An expectation maximization algorithm for training hidden substitution models.
Holmes I; Rubin GM
J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022
[TBL] [Abstract][Full Text] [Related]
18. Protein structural similarity search by Ramachandran codes.
Lo WC; Huang PJ; Chang CH; Lyu PC
BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
[TBL] [Abstract][Full Text] [Related]
19. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
Shah AR; Oehmen CS; Webb-Robertson BJ
Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
[TBL] [Abstract][Full Text] [Related]
20. Protein ranking by semi-supervised network propagation.
Weston J; Kuang R; Leslie C; Noble WS
BMC Bioinformatics; 2006 Mar; 7 Suppl 1(Suppl 1):S10. PubMed ID: 16723003
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
