254 related articles for article (PubMed ID: 16223790)
1. Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences.
O'Connor TR; Dyreson C; Wyrick JJ
Bioinformatics; 2005 Dec; 21(24):4411-3. PubMed ID: 16223790
[TBL] [Abstract][Full Text] [Related]
2. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
Davuluri RV; Sun H; Palaniswamy SK; Matthews N; Molina C; Kurtz M; Grotewold E
BMC Bioinformatics; 2003 Jun; 4():25. PubMed ID: 12820902
[TBL] [Abstract][Full Text] [Related]
3. Osiris: an integrated promoter database for Oryza sativa L.
Morris RT; O'Connor TR; Wyrick JJ
Bioinformatics; 2008 Dec; 24(24):2915-7. PubMed ID: 18922805
[TBL] [Abstract][Full Text] [Related]
4. Positional distribution of transcription factor binding sites in Arabidopsis thaliana.
Yu CP; Lin JJ; Li WH
Sci Rep; 2016 Apr; 6():25164. PubMed ID: 27117388
[TBL] [Abstract][Full Text] [Related]
5. DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants.
Barta E; Sebestyén E; Pálfy TB; Tóth G; Ortutay CP; Patthy L
Nucleic Acids Res; 2005 Jan; 33(Database issue):D86-90. PubMed ID: 15608291
[TBL] [Abstract][Full Text] [Related]
6. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast.
Kelemen Z; Sebastian A; Xu W; Grain D; Salsac F; Avon A; Berger N; Tran J; Dubreucq B; Lurin C; Lepiniec L; Contreras-Moreira B; Dubos C
PLoS One; 2015; 10(10):e0141044. PubMed ID: 26484765
[TBL] [Abstract][Full Text] [Related]
7. AthaMap: from in silico data to real transcription factor binding sites.
Bülow L; Steffens NO; Galuschka C; Schindler M; Hehl R
In Silico Biol; 2006; 6(3):243-52. PubMed ID: 16922688
[TBL] [Abstract][Full Text] [Related]
8. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
Palaniswamy SK; James S; Sun H; Lamb RS; Davuluri RV; Grotewold E
Plant Physiol; 2006 Mar; 140(3):818-29. PubMed ID: 16524982
[TBL] [Abstract][Full Text] [Related]
9. Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis.
Koshino-Kimura Y; Wada T; Tachibana T; Tsugeki R; Ishiguro S; Okada K
Plant Cell Physiol; 2005 Jun; 46(6):817-26. PubMed ID: 15795220
[TBL] [Abstract][Full Text] [Related]
10. Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors.
Godoy M; Franco-Zorrilla JM; Pérez-Pérez J; Oliveros JC; Lorenzo O; Solano R
Plant J; 2011 May; 66(4):700-11. PubMed ID: 21284757
[TBL] [Abstract][Full Text] [Related]
11. MicroRNA promoter element discovery in Arabidopsis.
Megraw M; Baev V; Rusinov V; Jensen ST; Kalantidis K; Hatzigeorgiou AG
RNA; 2006 Sep; 12(9):1612-9. PubMed ID: 16888323
[TBL] [Abstract][Full Text] [Related]
12. A segment containing a G-box and an ACGT motif confers differential expression characteristics and responses to the Arabidopsis Cytc-2 gene, encoding an isoform of cytochrome c.
Welchen E; Viola IL; Kim HJ; Prendes LP; Comelli RN; Hong JC; Gonzalez DH
J Exp Bot; 2009; 60(3):829-45. PubMed ID: 19098132
[TBL] [Abstract][Full Text] [Related]
13. Heat stress-dependent DNA binding of Arabidopsis heat shock transcription factor HSF1 to heat shock gene promoters in Arabidopsis suspension culture cells in vivo.
Zhang L; Lohmann C; Prändl R; Schöffl F
Biol Chem; 2003 Jun; 384(6):959-63. PubMed ID: 12887064
[TBL] [Abstract][Full Text] [Related]
14. An arabidopsis promoter microarray and its initial usage in the identification of HY5 binding targets in vitro.
Gao Y; Li J; Strickland E; Hua S; Zhao H; Chen Z; Qu L; Deng XW
Plant Mol Biol; 2004 Mar; 54(5):683-99. PubMed ID: 15356388
[TBL] [Abstract][Full Text] [Related]
15. Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.
Miao Y; Laun T; Zimmermann P; Zentgraf U
Plant Mol Biol; 2004 Aug; 55(6):853-67. PubMed ID: 15604721
[TBL] [Abstract][Full Text] [Related]
16. From promoter analysis to transcriptional regulatory network prediction using PAINT.
Gonye GE; Chakravarthula P; Schwaber JS; Vadigepalli R
Methods Mol Biol; 2007; 408():49-68. PubMed ID: 18314577
[TBL] [Abstract][Full Text] [Related]
17. Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
Czechowski T; Bari RP; Stitt M; Scheible WR; Udvardi MK
Plant J; 2004 Apr; 38(2):366-79. PubMed ID: 15078338
[TBL] [Abstract][Full Text] [Related]
18. Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3.
Konishi M; Yanagisawa S
Plant J; 2008 Sep; 55(5):821-31. PubMed ID: 18466304
[TBL] [Abstract][Full Text] [Related]
19. Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.
Thibaud-Nissen F; Wu H; Richmond T; Redman JC; Johnson C; Green R; Arias J; Town CD
Plant J; 2006 Jul; 47(1):152-62. PubMed ID: 16824183
[TBL] [Abstract][Full Text] [Related]
20. Vascular expression in Arabidopsis is predicted by the frequency of CT/GA-rich repeats in gene promoters.
Ruiz-Medrano R; Xoconostle-Cázares B; Ham BK; Li G; Lucas WJ
Plant J; 2011 Jul; 67(1):130-44. PubMed ID: 21435051
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
