137 related articles for article (PubMed ID: 16229143)
1. Molecular modeling study of the mechanism of ligand binding to human melatonin receptors.
Voronkov AE; Ivanov AA; Baskin II; Palyulin VA; Zefirov NS
Dokl Biochem Biophys; 2005; 403():284-8. PubMed ID: 16229143
[No Abstract] [Full Text] [Related]
2. The study of the mechanism of binding of human ML1A melatonin receptor ligands using molecular modeling.
Ivanov AA; Voronkov AE; Baskin II; Palyulin VA; Zefirov NS
Dokl Biochem Biophys; 2004; 394():49-52. PubMed ID: 15116569
[No Abstract] [Full Text] [Related]
3. Improving homology models for protein-ligand binding sites.
Kauffman C; Rangwala H; Karypis G
Comput Syst Bioinformatics Conf; 2008; 7():211-22. PubMed ID: 19642282
[TBL] [Abstract][Full Text] [Related]
4. Binding crevice for TT-232 in a homology model of type 1 somatostatin receptor.
Simon A; Czajlik A; Perczel A; Kéri G; Nyikos L; Emri Z; Kardos J
Biochem Biophys Res Commun; 2004 Apr; 316(4):1059-64. PubMed ID: 15044092
[TBL] [Abstract][Full Text] [Related]
5. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
6. Predicting secondary structures of proteins. Recognizing properties of amino acids with the logical analysis of data algorithm.
Błazewicz J; Hammer PL; Lukasiak P
IEEE Eng Med Biol Mag; 2005; 24(3):88-94. PubMed ID: 15971846
[No Abstract] [Full Text] [Related]
7. DNase II is a member of the phospholipase D superfamily.
Cymerman IA; Meiss G; Bujnicki JM
Bioinformatics; 2005 Nov; 21(21):3959-62. PubMed ID: 16150810
[TBL] [Abstract][Full Text] [Related]
8. Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases.
Verkhivker GM
Bioinformatics; 2006 Aug; 22(15):1846-54. PubMed ID: 16720585
[TBL] [Abstract][Full Text] [Related]
9. On the relationship between sequence and structure similarities in proteomics.
Krissinel E
Bioinformatics; 2007 Mar; 23(6):717-23. PubMed ID: 17242029
[TBL] [Abstract][Full Text] [Related]
10. Prediction of 5-HT3 receptor agonist-binding residues using homology modeling.
Reeves DC; Sayed MF; Chau PL; Price KL; Lummis SC
Biophys J; 2003 Apr; 84(4):2338-44. PubMed ID: 12668442
[TBL] [Abstract][Full Text] [Related]
11. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
Laurie AT; Jackson RM
Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
[TBL] [Abstract][Full Text] [Related]
12. The functional motifs that are revealed in the gypsy Gag amino acid sequence.
Syomin BV; Ilyin YV
Dokl Biochem Biophys; 2004; 398():291-3. PubMed ID: 15584510
[No Abstract] [Full Text] [Related]
13. Differences in binding sites of two melatonin receptors help to explain their selectivity to some melatonin analogs: a molecular modeling study.
Chugunov AO; Farce A; Chavatte P; Efremov RG
J Biomol Struct Dyn; 2006 Oct; 24(2):91-107. PubMed ID: 16928133
[TBL] [Abstract][Full Text] [Related]
14. Fast and accurate multi-class protein fold recognition with spatial sample kernels.
Kuksa P; Huang PH; Pavlovic V
Comput Syst Bioinformatics Conf; 2008; 7():133-43. PubMed ID: 19642275
[TBL] [Abstract][Full Text] [Related]
15. Recruitment of rare 3-grams at functional sites: is this a mechanism for increasing enzyme specificity?
Tobi D; Bahar I
BMC Bioinformatics; 2007 Jun; 8():226. PubMed ID: 17598909
[TBL] [Abstract][Full Text] [Related]
16. Evidence for lectin activity of a plant receptor-like protein kinase by application of neoglycoproteins and bioinformatic algorithms.
André S; Siebert HC; Nishiguchi M; Tazaki K; Gabius HJ
Biochim Biophys Acta; 2005 Sep; 1725(2):222-32. PubMed ID: 15878637
[TBL] [Abstract][Full Text] [Related]
17. Homology modeling of MT1 and MT2 receptors.
Farce A; Chugunov AO; Logé C; Sabaouni A; Yous S; Dilly S; Renault N; Vergoten G; Efremov RG; Lesieur D; Chavatte P
Eur J Med Chem; 2008 Sep; 43(9):1926-44. PubMed ID: 18255198
[TBL] [Abstract][Full Text] [Related]
18. L/D Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein-ligand complexes.
Puvanendrampillai D; Mitchell JB
Bioinformatics; 2003 Sep; 19(14):1856-7. PubMed ID: 14512362
[TBL] [Abstract][Full Text] [Related]
19. Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin.
Zhou CL; Zemla AT; Roe D; Young M; Lam M; Schoeniger JS; Balhorn R
Bioinformatics; 2005 Jul; 21(14):3089-96. PubMed ID: 15905278
[TBL] [Abstract][Full Text] [Related]
20. Prediction of functional sites based on the fuzzy oil drop model.
Bryliński M; Prymula K; Jurkowski W; Kochańczyk M; Stawowczyk E; Konieczny L; Roterman I
PLoS Comput Biol; 2007 May; 3(5):e94. PubMed ID: 17530916
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]