357 related articles for article (PubMed ID: 16244657)
1. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.
Penchovsky R; Breaker RR
Nat Biotechnol; 2005 Nov; 23(11):1424-33. PubMed ID: 16244657
[TBL] [Abstract][Full Text] [Related]
2. Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.
Koizumi M; Soukup GA; Kerr JN; Breaker RR
Nat Struct Biol; 1999 Nov; 6(11):1062-71. PubMed ID: 10542100
[TBL] [Abstract][Full Text] [Related]
3. Computational design of allosteric ribozymes as molecular biosensors.
Penchovsky R
Biotechnol Adv; 2014; 32(5):1015-27. PubMed ID: 24877999
[TBL] [Abstract][Full Text] [Related]
4. Boolean calculations made easy (for ribozymes).
Margolin AA; Stojanovic MN
Nat Biotechnol; 2005 Nov; 23(11):1374-6. PubMed ID: 16273066
[No Abstract] [Full Text] [Related]
5. An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms.
Kaloudas D; Penchovsky R
Comput Biol Med; 2022 Jun; 145():105469. PubMed ID: 35398809
[TBL] [Abstract][Full Text] [Related]
6. A general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes.
Wang DY; Lai BH; Sen D
J Mol Biol; 2002 Apr; 318(1):33-43. PubMed ID: 12054766
[TBL] [Abstract][Full Text] [Related]
7. Engineering high-speed allosteric hammerhead ribozymes.
Link KH; Guo L; Ames TD; Yen L; Mulligan RC; Breaker RR
Biol Chem; 2007 Aug; 388(8):779-86. PubMed ID: 17655496
[TBL] [Abstract][Full Text] [Related]
8. Deprotonation stimulates productive folding in allosteric TRAP hammerhead ribozymes.
Saksmerprome V; Burke DH
J Mol Biol; 2004 Aug; 341(3):685-94. PubMed ID: 15288779
[TBL] [Abstract][Full Text] [Related]
9. Engineered allosteric ribozymes that respond to specific divalent metal ions.
Zivarts M; Liu Y; Breaker RR
Nucleic Acids Res; 2005; 33(2):622-31. PubMed ID: 15681614
[TBL] [Abstract][Full Text] [Related]
10. Computational design and biosensor applications of small molecule-sensing allosteric ribozymes.
Penchovsky R
Biomacromolecules; 2013 Apr; 14(4):1240-9. PubMed ID: 23452219
[TBL] [Abstract][Full Text] [Related]
11. Regulation of ribozyme cleavage activity by oligonucleotides.
Komatsu Y; Ohtsuka E
Methods Mol Biol; 2004; 252():165-77. PubMed ID: 15017048
[TBL] [Abstract][Full Text] [Related]
12. Selection in vitro of allosteric ribozymes.
Roth A; Breaker RR
Methods Mol Biol; 2004; 252():145-64. PubMed ID: 15017047
[TBL] [Abstract][Full Text] [Related]
13. Monitoring protein modification with allosteric ribozymes.
Vaish NK; Kossen K; Andrews LE; Pasko C; Seiwert SD
Methods; 2004 Apr; 32(4):428-36. PubMed ID: 15003605
[TBL] [Abstract][Full Text] [Related]
14. Altering molecular recognition of RNA aptamers by allosteric selection.
Soukup GA; Emilsson GA; Breaker RR
J Mol Biol; 2000 May; 298(4):623-32. PubMed ID: 10788325
[TBL] [Abstract][Full Text] [Related]
15. Engineering integrated digital circuits with allosteric ribozymes for scaling up molecular computation and diagnostics.
Penchovsky R
ACS Synth Biol; 2012 Oct; 1(10):471-82. PubMed ID: 23656185
[TBL] [Abstract][Full Text] [Related]
16. Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector.
Najafi-Shoushtari SH; Famulok M
RNA; 2005 Oct; 11(10):1514-20. PubMed ID: 16199761
[TBL] [Abstract][Full Text] [Related]
17. Reversible photo-regulation of a hammerhead ribozyme using a diffusible effector.
Lee HW; Robinson SG; Bandyopadhyay S; Mitchell RH; Sen D
J Mol Biol; 2007 Aug; 371(5):1163-73. PubMed ID: 17619022
[TBL] [Abstract][Full Text] [Related]
18. GHOST-NOT and GHOST-YES: Two programs for generating high-speed biosensors with randomized oligonucleotide binding sites with NOT or YES Boolean logic functions based on experimentally validated algorithms.
Kaloudas D; Pavlova N; Penchovsky R
J Biotechnol; 2023 Aug; 373():82-89. PubMed ID: 37499876
[TBL] [Abstract][Full Text] [Related]
19. In vitro selection of allosteric ribozymes: theory and experimental validation.
Piganeau N; Thuillier V; Famulok M
J Mol Biol; 2001 Oct; 312(5):1177-90. PubMed ID: 11580234
[TBL] [Abstract][Full Text] [Related]
20. Design of hairpin ribozymes for in vitro and cellular applications.
Yu Q; Burke JM
Methods Mol Biol; 1997; 74():161-9. PubMed ID: 9204431
[No Abstract] [Full Text] [Related]
[Next] [New Search]
