These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

275 related articles for article (PubMed ID: 16254081)

  • 1. Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.
    Laserson U; Gan HH; Schlick T
    Nucleic Acids Res; 2005; 33(18):6057-69. PubMed ID: 16254081
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An algorithm for searching RNA motifs in genomic sequences.
    Liu J; Ma B; Zhang K
    Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RAG: RNA-As-Graphs database--concepts, analysis, and features.
    Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T
    Bioinformatics; 2004 May; 20(8):1285-91. PubMed ID: 14962931
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Ji Y; Xu X; Stormo GD
    Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T; Blencowe BJ; Hughes TR
    BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Synthetic biology with RNA motifs.
    Saito H; Inoue T
    Int J Biochem Cell Biol; 2009 Feb; 41(2):398-404. PubMed ID: 18775792
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
    Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
    Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Candidates for novel RNA topologies.
    Kim N; Shiffeldrim N; Gan HH; Schlick T
    J Mol Biol; 2004 Aug; 341(5):1129-44. PubMed ID: 15321711
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational analysis of RNAs.
    Eddy SR
    Cold Spring Harb Symp Quant Biol; 2006; 71():117-28. PubMed ID: 17381287
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A dedicated computational approach for the identification of archaeal H/ACA sRNAs.
    Muller S; Charpentier B; Branlant C; Leclerc F
    Methods Enzymol; 2007; 425():355-87. PubMed ID: 17673091
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA structural motifs: building blocks of a modular biomolecule.
    Hendrix DK; Brenner SE; Holbrook SR
    Q Rev Biophys; 2005 Aug; 38(3):221-43. PubMed ID: 16817983
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The computational detection of functional nucleotide sequence motifs in the coding regions of organisms.
    Robins H; Krasnitz M; Levine AJ
    Exp Biol Med (Maywood); 2008 Jun; 233(6):665-73. PubMed ID: 18408149
    [TBL] [Abstract][Full Text] [Related]  

  • 13. STR2: a structure to string approach for locating G-box riboswitch shapes in pre-selected genes.
    Bergig O; Barash D; Nudler E; Kedem K
    In Silico Biol; 2004; 4(4):593-604. PubMed ID: 15752075
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    Washietl S; Hofacker IL
    J Mol Biol; 2004 Sep; 342(1):19-30. PubMed ID: 15313604
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes.
    Rabani M; Kertesz M; Segal E
    Proc Natl Acad Sci U S A; 2008 Sep; 105(39):14885-90. PubMed ID: 18815376
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mining frequent stem patterns from unaligned RNA sequences.
    Hamada M; Tsuda K; Kudo T; Kin T; Asai K
    Bioinformatics; 2006 Oct; 22(20):2480-7. PubMed ID: 16908501
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y; Tsuda K; Kin T; Asai K
    Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
    [TBL] [Abstract][Full Text] [Related]  

  • 19. sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.
    Livny J; Fogel MA; Davis BM; Waldor MK
    Nucleic Acids Res; 2005; 33(13):4096-105. PubMed ID: 16049021
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [A method for prediction of conserved RNA secondary structures].
    Mironov AA
    Mol Biol (Mosk); 2007; 41(4):711-8. PubMed ID: 17936993
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.