BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

54 related articles for article (PubMed ID: 16267143)

  • 1. An evolutionary space-time model with varying among-site dependencies.
    Stern A; Pupko T
    Mol Biol Evol; 2006 Feb; 23(2):392-400. PubMed ID: 16267143
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.
    Baele G; Van de Peer Y; Vansteelandt S
    Syst Biol; 2008 Oct; 57(5):675-92. PubMed ID: 18853356
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein evolution with dependence among codons due to tertiary structure.
    Robinson DM; Jones DT; Kishino H; Goldman N; Thorne JL
    Mol Biol Evol; 2003 Oct; 20(10):1692-704. PubMed ID: 12885968
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
    Mayrose I; Doron-Faigenboim A; Bacharach E; Pupko T
    Bioinformatics; 2007 Jul; 23(13):i319-27. PubMed ID: 17646313
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Testing for covarion-like evolution in protein sequences.
    Wang HC; Spencer M; Susko E; Roger AJ
    Mol Biol Evol; 2007 Jan; 24(1):294-305. PubMed ID: 17056642
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modelling interaction sites in protein domains with interaction profile hidden Markov models.
    Friedrich T; Pils B; Dandekar T; Schultz J; Müller T
    Bioinformatics; 2006 Dec; 22(23):2851-7. PubMed ID: 17000753
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A combined empirical and mechanistic codon model.
    Doron-Faigenboim A; Pupko T
    Mol Biol Evol; 2007 Feb; 24(2):388-97. PubMed ID: 17110464
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mathematical elegance with biochemical realism: the covarion model of molecular evolution.
    Penny D; McComish BJ; Charleston MA; Hendy MD
    J Mol Evol; 2001 Dec; 53(6):711-23. PubMed ID: 11677631
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Estimation of amino acid residue substitution rates at local spatial regions and application in protein function inference: a Bayesian Monte Carlo approach.
    Tseng YY; Liang J
    Mol Biol Evol; 2006 Feb; 23(2):421-36. PubMed ID: 16251508
    [TBL] [Abstract][Full Text] [Related]  

  • 10. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.
    Strope CL; Scott SD; Moriyama EN
    Mol Biol Evol; 2007 Mar; 24(3):640-9. PubMed ID: 17158778
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons.
    Rodrigue N; Kleinman CL; Philippe H; Lartillot N
    Mol Biol Evol; 2009 Jul; 26(7):1663-76. PubMed ID: 19383983
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evolution and structural diversification of hyperpolarization-activated cyclic nucleotide-gated channel genes.
    Jackson HA; Marshall CR; Accili EA
    Physiol Genomics; 2007 May; 29(3):231-45. PubMed ID: 17227887
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Two stationary nonhomogeneous Markov models of nucleotide sequence evolution.
    Jayaswal V; Jermiin LS; Poladian L; Robinson J
    Syst Biol; 2011 Jan; 60(1):74-86. PubMed ID: 21081482
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
    Bao L; Gu H; Dunn KA; Bielawski JP
    Mol Biol Evol; 2008 Sep; 25(9):1995-2007. PubMed ID: 18586695
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Continuous and tractable models for the variation of evolutionary rates.
    Lepage T; Lawi S; Tupper P; Bryant D
    Math Biosci; 2006 Feb; 199(2):216-33. PubMed ID: 16406009
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evolutionary model selection with a genetic algorithm: a case study using stem RNA.
    Kosakovsky Pond SL; Mannino FV; Gravenor MB; Muse SV; Frost SD
    Mol Biol Evol; 2007 Jan; 24(1):159-70. PubMed ID: 17038448
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Rank information: a structure-independent measure of evolutionary trace quality that improves identification of protein functional sites.
    Yao H; Mihalek I; Lichtarge O
    Proteins; 2006 Oct; 65(1):111-23. PubMed ID: 16894615
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fuzzy Hidden Markov Models: a new approach in multiple sequence alignment.
    Collyda C; Diplaris S; Mitkas PA; Maglaveras N; Pappas C
    Stud Health Technol Inform; 2006; 124():99-104. PubMed ID: 17108510
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A 9-state hidden Markov model using protein secondary structure information for protein fold recognition.
    Lee SY; Lee JY; Jung KS; Ryu KH
    Comput Biol Med; 2009 Jun; 39(6):527-34. PubMed ID: 19394594
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites.
    Allman ES; Rhodes JA
    Math Biosci; 2008 Jan; 211(1):18-33. PubMed ID: 17964612
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 3.