57 related articles for article (PubMed ID: 16268784)
1. MOLS--a program to explore the potential energy surface of a peptide and locate its low energy conformations.
Prasad PA; Vengadesan K; Gautham N
In Silico Biol; 2005; 5(4):401-5. PubMed ID: 16268784
[TBL] [Abstract][Full Text] [Related]
2. Conformational studies on enkephalins using the MOLS technique.
Vengadesan K; Gautham N
Biopolymers; 2004 Aug; 74(6):476-94. PubMed ID: 15274091
[TBL] [Abstract][Full Text] [Related]
3. MOLS 2.0: software package for peptide modeling and protein-ligand docking.
Paul DS; Gautham N
J Mol Model; 2016 Oct; 22(10):239. PubMed ID: 27638416
[TBL] [Abstract][Full Text] [Related]
4. ForceFit: a code to fit classical force fields to quantum mechanical potential energy surfaces.
Waldher B; Kuta J; Chen S; Henson N; Clark AE
J Comput Chem; 2010 Sep; 31(12):2307-16. PubMed ID: 20340109
[TBL] [Abstract][Full Text] [Related]
5. An application of experimental design using mutually orthogonal Latin squares in conformational studies of peptides.
Vengadesan K; Anbupalam T; Gautham N
Biochem Biophys Res Commun; 2004 Apr; 316(3):731-7. PubMed ID: 15033460
[TBL] [Abstract][Full Text] [Related]
6. pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.
Wang LH; Li DQ; Fu Y; Wang HP; Zhang JF; Yuan ZF; Sun RX; Zeng R; He SM; Gao W
Rapid Commun Mass Spectrom; 2007; 21(18):2985-91. PubMed ID: 17702057
[TBL] [Abstract][Full Text] [Related]
7. PHY.FI: fast and easy online creation and manipulation of phylogeny color figures.
Fredslund J
BMC Bioinformatics; 2006 Jun; 7():315. PubMed ID: 16792795
[TBL] [Abstract][Full Text] [Related]
8. iMOLSDOCK: Induced-fit docking using mutually orthogonal Latin squares (MOLS).
Paul DS; Gautham N
J Mol Graph Model; 2017 Jun; 74():89-99. PubMed ID: 28365533
[TBL] [Abstract][Full Text] [Related]
9. TwoMP: a MATLAB graphical user interface for two-mode partitioning.
Schepers J; Hofmans J
Behav Res Methods; 2009 May; 41(2):507-14. PubMed ID: 19363191
[TBL] [Abstract][Full Text] [Related]
10. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
Spassov VZ; Flook PK; Yan L
Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
[TBL] [Abstract][Full Text] [Related]
11. Simulation of complex pharmacokinetic models in Microsoft Excel.
Meineke I; Brockmöller J
Comput Methods Programs Biomed; 2007 Dec; 88(3):239-45. PubMed ID: 17981357
[TBL] [Abstract][Full Text] [Related]
12. A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
Bellew M; Coram M; Fitzgibbon M; Igra M; Randolph T; Wang P; May D; Eng J; Fang R; Lin C; Chen J; Goodlett D; Whiteaker J; Paulovich A; McIntosh M
Bioinformatics; 2006 Aug; 22(15):1902-9. PubMed ID: 16766559
[TBL] [Abstract][Full Text] [Related]
13. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
[TBL] [Abstract][Full Text] [Related]
14. MASDET-A fast and user-friendly multiplatform software for mass determination by dark-field electron microscopy.
Krzyzánek V; Müller SA; Engel A; Reichelt R
J Struct Biol; 2009 Feb; 165(2):78-87. PubMed ID: 19041401
[TBL] [Abstract][Full Text] [Related]
15. Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR.
Holleley CE; Geerts PG
Biotechniques; 2009 Jun; 46(7):511-7. PubMed ID: 19594450
[TBL] [Abstract][Full Text] [Related]
16. Enhanced sampling of the molecular potential energy surface using mutually orthogonal latin squares: application to peptide structures.
Vengadesan K; Gautham N
Biophys J; 2003 May; 84(5):2897-906. PubMed ID: 12719222
[TBL] [Abstract][Full Text] [Related]
17. RNACluster: An integrated tool for RNA secondary structure comparison and clustering.
Liu Q; Olman V; Liu H; Ye X; Qiu S; Xu Y
J Comput Chem; 2008 Jul; 29(9):1517-26. PubMed ID: 18271070
[TBL] [Abstract][Full Text] [Related]
18. InterferenceAnalyzer: tools for the analysis and simulation of multi-locus genetic data.
Viswanath L; Housworth EA
BMC Bioinformatics; 2005 Dec; 6():297. PubMed ID: 16343334
[TBL] [Abstract][Full Text] [Related]
19. Wordom: a program for efficient analysis of molecular dynamics simulations.
Seeber M; Cecchini M; Rao F; Settanni G; Caflisch A
Bioinformatics; 2007 Oct; 23(19):2625-7. PubMed ID: 17717034
[TBL] [Abstract][Full Text] [Related]
20. Protein structure prediction using mutually orthogonal Latin squares and a genetic algorithm.
Arunachalam J; Kanagasabai V; Gautham N
Biochem Biophys Res Commun; 2006 Apr; 342(2):424-33. PubMed ID: 16487483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
