159 related articles for article (PubMed ID: 16278946)
1. Randomized algorithms for motif detection.
Wang L; Dong L
J Bioinform Comput Biol; 2005 Oct; 3(5):1039-52. PubMed ID: 16278946
[TBL] [Abstract][Full Text] [Related]
2. Voting algorithms for the motif finding problem.
Liu X; Ma B; Wang L
Comput Syst Bioinformatics Conf; 2008; 7():37-47. PubMed ID: 19642267
[TBL] [Abstract][Full Text] [Related]
3. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
Liang KC; Wang X; Anastassiou D
Bioinformatics; 2008 Jan; 24(1):46-55. PubMed ID: 18024972
[TBL] [Abstract][Full Text] [Related]
4. GARD: a genetic algorithm for recombination detection.
Kosakovsky Pond SL; Posada D; Gravenor MB; Woelk CH; Frost SD
Bioinformatics; 2006 Dec; 22(24):3096-8. PubMed ID: 17110367
[TBL] [Abstract][Full Text] [Related]
5. Finding motifs in the twilight zone.
Keich U; Pevzner PA
Bioinformatics; 2002 Oct; 18(10):1374-81. PubMed ID: 12376382
[TBL] [Abstract][Full Text] [Related]
6. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
Le T; Altman T; Gardiner K
Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
[TBL] [Abstract][Full Text] [Related]
7. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
Mrázek J; Xie S
Bioinformatics; 2006 Dec; 22(24):3099-100. PubMed ID: 17095514
[TBL] [Abstract][Full Text] [Related]
8. SEGID: identifying interesting segments in (multiple) sequence alignments.
Wang L; Xu Y
Bioinformatics; 2003 Jan; 19(2):297-8. PubMed ID: 12538258
[TBL] [Abstract][Full Text] [Related]
9. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
[TBL] [Abstract][Full Text] [Related]
10. Statistical detection of chromosomal homology using shared-gene density alone.
Hampson SE; Gaut BS; Baldi P
Bioinformatics; 2005 Apr; 21(8):1339-48. PubMed ID: 15585535
[TBL] [Abstract][Full Text] [Related]
11. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
Favorov AV; Gelfand MS; Gerasimova AV; Ravcheev DA; Mironov AA; Makeev VJ
Bioinformatics; 2005 May; 21(10):2240-5. PubMed ID: 15728117
[TBL] [Abstract][Full Text] [Related]
12. SCOPE: a web server for practical de novo motif discovery.
Carlson JM; Chakravarty A; DeZiel CE; Gross RH
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W259-64. PubMed ID: 17485471
[TBL] [Abstract][Full Text] [Related]
13. Subtle motifs: defining the limits of motif finding algorithms.
Keich U; Pevzner PA
Bioinformatics; 2002 Oct; 18(10):1382-90. PubMed ID: 12376383
[TBL] [Abstract][Full Text] [Related]
14. LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
Lawrence CJ; Zmasek CM; Dawe RK; Malmberg RL
Bioinformatics; 2004 Aug; 20(12):1977-9. PubMed ID: 15044241
[TBL] [Abstract][Full Text] [Related]
15. Parametric alignment of ordered trees.
Wang L; Zhao J
Bioinformatics; 2003 Nov; 19(17):2237-45. PubMed ID: 14630652
[TBL] [Abstract][Full Text] [Related]
16. cWINNOWER algorithm for finding fuzzy dna motifs.
Liang S; Samanta MP; Biegel BA
J Bioinform Comput Biol; 2004 Mar; 2(1):47-60. PubMed ID: 15272432
[TBL] [Abstract][Full Text] [Related]
17. A probabilistic method to detect regulatory modules.
Sinha S; van Nimwegen E; Siggia ED
Bioinformatics; 2003; 19 Suppl 1():i292-301. PubMed ID: 12855472
[TBL] [Abstract][Full Text] [Related]
18. Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone.
Ng P; Nagarajan N; Jones N; Keich U
Bioinformatics; 2006 Jul; 22(14):e393-401. PubMed ID: 16873498
[TBL] [Abstract][Full Text] [Related]
19. Logos: a modular bayesian model for de novo motif detection.
Xing EP; Wu W; Jordan MI; Karp RM
J Bioinform Comput Biol; 2004 Mar; 2(1):127-54. PubMed ID: 15272436
[TBL] [Abstract][Full Text] [Related]
20. MotifCut: regulatory motifs finding with maximum density subgraphs.
Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
