877 related articles for article (PubMed ID: 16287941)
1. WindowMasker: window-based masker for sequenced genomes.
Morgulis A; Gertz EM; Schäffer AA; Agarwala R
Bioinformatics; 2006 Jan; 22(2):134-41. PubMed ID: 16287941
[TBL] [Abstract][Full Text] [Related]
2. RBR: library-less repeat detection for ESTs.
Malde K; Schneeberger K; Coward E; Jonassen I
Bioinformatics; 2006 Sep; 22(18):2232-6. PubMed ID: 16837527
[TBL] [Abstract][Full Text] [Related]
3. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
[TBL] [Abstract][Full Text] [Related]
4. HomologMiner: looking for homologous genomic groups in whole genomes.
Hou M; Berman P; Hsu CH; Harris RS
Bioinformatics; 2007 Apr; 23(8):917-25. PubMed ID: 17308341
[TBL] [Abstract][Full Text] [Related]
5. OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Chiu JC; Lee EK; Egan MG; Sarkar IN; Coruzzi GM; DeSalle R
Bioinformatics; 2006 Mar; 22(6):699-707. PubMed ID: 16410324
[TBL] [Abstract][Full Text] [Related]
6. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
[TBL] [Abstract][Full Text] [Related]
7. Using RepeatMasker to identify repetitive elements in genomic sequences.
Chen N
Curr Protoc Bioinformatics; 2004 May; Chapter 4():Unit 4.10. PubMed ID: 18428725
[TBL] [Abstract][Full Text] [Related]
8. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
9. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
10. Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
Alekseyenko AV; Lee CJ
Bioinformatics; 2007 Jun; 23(11):1386-93. PubMed ID: 17234640
[TBL] [Abstract][Full Text] [Related]
11. Indel seeds for homology search.
Mak D; Gelfand Y; Benson G
Bioinformatics; 2006 Jul; 22(14):e341-9. PubMed ID: 16873491
[TBL] [Abstract][Full Text] [Related]
12. PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
Hulsen T; de Vlieg J; Groenen PM
BMC Bioinformatics; 2006 Sep; 7():398. PubMed ID: 16948844
[TBL] [Abstract][Full Text] [Related]
13. Compressed indexing and local alignment of DNA.
Lam TW; Sung WK; Tam SL; Wong CK; Yiu SM
Bioinformatics; 2008 Mar; 24(6):791-7. PubMed ID: 18227115
[TBL] [Abstract][Full Text] [Related]
14. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
Uchiyama I; Higuchi T; Kobayashi I
BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
[TBL] [Abstract][Full Text] [Related]
15. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
Siddharthan R
BMC Bioinformatics; 2006 Mar; 7():143. PubMed ID: 16542424
[TBL] [Abstract][Full Text] [Related]
16. Homology search for genes.
Cui X; Vinar T; Brejová B; Shasha D; Li M
Bioinformatics; 2007 Jul; 23(13):i97-103. PubMed ID: 17646351
[TBL] [Abstract][Full Text] [Related]
17. Tracembler--software for in-silico chromosome walking in unassembled genomes.
Dong Q; Wilkerson MD; Brendel V
BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
[TBL] [Abstract][Full Text] [Related]
18. Assembly reconciliation.
Zimin AV; Smith DR; Sutton G; Yorke JA
Bioinformatics; 2008 Jan; 24(1):42-5. PubMed ID: 18057021
[TBL] [Abstract][Full Text] [Related]
19. Efficient identification of DNA hybridization partners in a sequence database.
Mann TP; Noble WS
Bioinformatics; 2006 Jul; 22(14):e350-8. PubMed ID: 16873493
[TBL] [Abstract][Full Text] [Related]
20. Efficient computation of all perfect repeats in genomic sequences of up to half a gigabyte, with a case study on the human genome.
Becher V; Deymonnaz A; Heiber P
Bioinformatics; 2009 Jul; 25(14):1746-53. PubMed ID: 19451169
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]