These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

132 related articles for article (PubMed ID: 16299776)

  • 1. Similarity networks of protein binding sites.
    Zhang Z; Grigorov MG
    Proteins; 2006 Feb; 62(2):470-8. PubMed ID: 16299776
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships.
    Gold ND; Jackson RM
    J Mol Biol; 2006 Feb; 355(5):1112-24. PubMed ID: 16359705
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Binding similarity network of ligand.
    Park K; Kim D
    Proteins; 2008 May; 71(2):960-71. PubMed ID: 18004762
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A searchable database for comparing protein-ligand binding sites for the analysis of structure-function relationships.
    Gold ND; Jackson RM
    J Chem Inf Model; 2006; 46(2):736-42. PubMed ID: 16563004
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SitesBase: a database for structure-based protein-ligand binding site comparisons.
    Gold ND; Jackson RM
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D231-4. PubMed ID: 16381853
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of protein active site structures for functional annotation of proteins and drug design.
    Powers R; Copeland JC; Germer K; Mercier KA; Ramanathan V; Revesz P
    Proteins; 2006 Oct; 65(1):124-35. PubMed ID: 16862592
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BSAlign: a rapid graph-based algorithm for detecting ligand-binding sites in protein structures.
    Aung Z; Tong JC
    Genome Inform; 2008; 21():65-76. PubMed ID: 19425148
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of the ligand binding sites on the molecular surface of proteins.
    Kinoshita K; Nakamura H
    Protein Sci; 2005 Mar; 14(3):711-8. PubMed ID: 15689509
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: an automated all-against-all structural comparison using geometric matching.
    Brakoulias A; Jackson RM
    Proteins; 2004 Aug; 56(2):250-60. PubMed ID: 15211509
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites.
    Weill N; Rognan D
    J Chem Inf Model; 2010 Jan; 50(1):123-35. PubMed ID: 20058856
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting small ligand binding sites in proteins using backbone structure.
    Bordner AJ
    Bioinformatics; 2008 Dec; 24(24):2865-71. PubMed ID: 18940825
    [TBL] [Abstract][Full Text] [Related]  

  • 14. sc-PDB: an annotated database of druggable binding sites from the Protein Data Bank.
    Kellenberger E; Muller P; Schalon C; Bret G; Foata N; Rognan D
    J Chem Inf Model; 2006; 46(2):717-27. PubMed ID: 16563002
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    Teyra J; Doms A; Schroeder M; Pisabarro MT
    BMC Bioinformatics; 2006 Mar; 7():104. PubMed ID: 16512892
    [TBL] [Abstract][Full Text] [Related]  

  • 16. New opportunities for protease ligand-binding site comparisons using SitesBase.
    Gold ND; Deville K; Jackson RM
    Biochem Soc Trans; 2007 Jun; 35(Pt 3):561-5. PubMed ID: 17511652
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
    Fernández D; Vendrell J; Avilés FX; Fernández-Recio J
    Proteins; 2007 Jul; 68(1):131-44. PubMed ID: 17407161
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions.
    Minai R; Matsuo Y; Onuki H; Hirota H
    Proteins; 2008 Jul; 72(1):367-81. PubMed ID: 18214952
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SCOWLP classification: structural comparison and analysis of protein binding regions.
    Teyra J; Paszkowski-Rogacz M; Anders G; Pisabarro MT
    BMC Bioinformatics; 2008 Jan; 9():9. PubMed ID: 18182098
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detection of functionally important regions in "hypothetical proteins" of known structure.
    Nimrod G; Schushan M; Steinberg DM; Ben-Tal N
    Structure; 2008 Dec; 16(12):1755-63. PubMed ID: 19081051
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.