289 related articles for article (PubMed ID: 16306388)
1. Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.
Sparks ME; Brendel V
Bioinformatics; 2005 Nov; 21 Suppl 3():iii20-30. PubMed ID: 16306388
[TBL] [Abstract][Full Text] [Related]
2. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.
Brendel V; Xing L; Zhu W
Bioinformatics; 2004 May; 20(7):1157-69. PubMed ID: 14764557
[TBL] [Abstract][Full Text] [Related]
3. Common introns within orthologous genes: software and application to plants.
Wilkerson MD; Ru Y; Brendel VP
Brief Bioinform; 2009 Nov; 10(6):631-44. PubMed ID: 19933210
[TBL] [Abstract][Full Text] [Related]
4. GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.
Schlueter SD; Dong Q; Brendel V
Nucleic Acids Res; 2003 Jul; 31(13):3597-600. PubMed ID: 12824374
[TBL] [Abstract][Full Text] [Related]
5. Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.
Usuka J; Brendel V
J Mol Biol; 2000 Apr; 297(5):1075-85. PubMed ID: 10764574
[TBL] [Abstract][Full Text] [Related]
6. PIP: a database of potential intron polymorphism markers.
Yang L; Jin G; Zhao X; Zheng Y; Xu Z; Wu W
Bioinformatics; 2007 Aug; 23(16):2174-7. PubMed ID: 17545179
[TBL] [Abstract][Full Text] [Related]
7. JIGSAW: integration of multiple sources of evidence for gene prediction.
Allen JE; Salzberg SL
Bioinformatics; 2005 Sep; 21(18):3596-603. PubMed ID: 16076884
[TBL] [Abstract][Full Text] [Related]
8. Optimal spliced alignment of homologous cDNA to a genomic DNA template.
Usuka J; Zhu W; Brendel V
Bioinformatics; 2000 Mar; 16(3):203-11. PubMed ID: 10869013
[TBL] [Abstract][Full Text] [Related]
9. Information for the Coordinates of Exons (ICE): a human splice sites database.
Chong A; Zhang G; Bajic VB
Genomics; 2004 Oct; 84(4):762-6. PubMed ID: 15475254
[TBL] [Abstract][Full Text] [Related]
10. One parameter to describe the mechanism of splice sites competition.
Yang W; Li QZ
Biochem Biophys Res Commun; 2008 Apr; 368(2):379-81. PubMed ID: 18230347
[TBL] [Abstract][Full Text] [Related]
11. SplicePort--an interactive splice-site analysis tool.
Dogan RI; Getoor L; Wilbur WJ; Mount SM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W285-91. PubMed ID: 17576680
[TBL] [Abstract][Full Text] [Related]
12. Ordered partitioning reveals extended splice-site consensus information.
Weir M; Rice M
Genome Res; 2004 Jan; 14(1):67-78. PubMed ID: 14707171
[TBL] [Abstract][Full Text] [Related]
13. Feature subset selection for splice site prediction.
Degroeve S; De Baets B; Van de Peer Y; Rouzé P
Bioinformatics; 2002; 18 Suppl 2():S75-83. PubMed ID: 12385987
[TBL] [Abstract][Full Text] [Related]
14. Advances in the Exon-Intron Database (EID).
Shepelev V; Fedorov A
Brief Bioinform; 2006 Jun; 7(2):178-85. PubMed ID: 16772261
[TBL] [Abstract][Full Text] [Related]
15. Utilisation of a cryptic non-canonical donor splice site of the gene encoding PARAFIBROMIN is associated with familial isolated primary hyperparathyroidism.
Bradley KJ; Cavaco BM; Bowl MR; Harding B; Young A; Thakker RV
J Med Genet; 2005 Aug; 42(8):e51. PubMed ID: 16061557
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
Pucker B; Brockington SF
BMC Genomics; 2018 Dec; 19(1):980. PubMed ID: 30594132
[TBL] [Abstract][Full Text] [Related]
17. U12DB: a database of orthologous U12-type spliceosomal introns.
Alioto TS
Nucleic Acids Res; 2007 Jan; 35(Database issue):D110-5. PubMed ID: 17082203
[TBL] [Abstract][Full Text] [Related]
18. The presence of GC-AG introns in Neurospora crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction.
Rep M; Duyvesteijn RG; Gale L; Usgaard T; Cornelissen BJ; Ma LJ; Ward TJ
Genomics; 2006 Mar; 87(3):338-47. PubMed ID: 16406724
[TBL] [Abstract][Full Text] [Related]
19. Improved spliced alignment from an information theoretic approach.
Zhang M; Gish W
Bioinformatics; 2006 Jan; 22(1):13-20. PubMed ID: 16267086
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide detection and analysis of alternative splicing for nucleotide binding site-leucine-rich repeats sequences in rice.
Gu L; Guo R
J Genet Genomics; 2007 Mar; 34(3):247-57. PubMed ID: 17498622
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
