188 related articles for article (PubMed ID: 16310166)
1. Correlation between mRNA and protein abundance in Desulfovibrio vulgaris: a multiple regression to identify sources of variations.
Nie L; Wu G; Zhang W
Biochem Biophys Res Commun; 2006 Jan; 339(2):603-10. PubMed ID: 16310166
[TBL] [Abstract][Full Text] [Related]
2. Integrated analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: zero-inflated Poisson regression models to predict abundance of undetected proteins.
Nie L; Wu G; Brockman FJ; Zhang W
Bioinformatics; 2006 Jul; 22(13):1641-7. PubMed ID: 16675466
[TBL] [Abstract][Full Text] [Related]
3. Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance.
Wu G; Nie L; Zhang W
Biochem Biophys Res Commun; 2006 May; 344(1):114-21. PubMed ID: 16603130
[TBL] [Abstract][Full Text] [Related]
4. Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis.
Nie L; Wu G; Zhang W
Genetics; 2006 Dec; 174(4):2229-43. PubMed ID: 17028312
[TBL] [Abstract][Full Text] [Related]
5. LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris.
Zhang W; Culley DE; Gritsenko MA; Moore RJ; Nie L; Scholten JC; Petritis K; Strittmatter EF; Camp DG; Smith RD; Brockman FJ
Biochem Biophys Res Commun; 2006 Nov; 349(4):1412-9. PubMed ID: 16982031
[TBL] [Abstract][Full Text] [Related]
6. Modified spectral count index (mSCI) for estimation of protein abundance by protein relative identification possibility (RIPpro): a new proteomic technological parameter.
Sun A; Zhang J; Wang C; Yang D; Wei H; Zhu Y; Jiang Y; He F
J Proteome Res; 2009 Nov; 8(11):4934-42. PubMed ID: 19764808
[TBL] [Abstract][Full Text] [Related]
7. Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis.
Pereira PM; He Q; Valente FM; Xavier AV; Zhou J; Pereira IA; Louro RO
Antonie Van Leeuwenhoek; 2008 May; 93(4):347-62. PubMed ID: 18060515
[TBL] [Abstract][Full Text] [Related]
8. Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.
Gaucher SP; Redding AM; Mukhopadhyay A; Keasling JD; Singh AK
J Proteome Res; 2008 Jun; 7(6):2320-31. PubMed ID: 18416566
[TBL] [Abstract][Full Text] [Related]
9. A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry.
Zhang W; Gritsenko MA; Moore RJ; Culley DE; Nie L; Petritis K; Strittmatter EF; Camp DG; Smith RD; Brockman FJ
Proteomics; 2006 Aug; 6(15):4286-99. PubMed ID: 16819729
[TBL] [Abstract][Full Text] [Related]
10. Global transcriptomic analysis of Desulfovibrio vulgaris on different electron donors.
Zhang W; Culley DE; Scholten JC; Hogan M; Vitiritti L; Brockman FJ
Antonie Van Leeuwenhoek; 2006 Feb; 89(2):221-37. PubMed ID: 16710634
[TBL] [Abstract][Full Text] [Related]
11. Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins.
Torres-García W; Zhang W; Runger GC; Johnson RH; Meldrum DR
Bioinformatics; 2009 Aug; 25(15):1905-14. PubMed ID: 19447782
[TBL] [Abstract][Full Text] [Related]
12. Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations.
Mehra A; Lee KH; Hatzimanikatis V
Biotechnol Bioeng; 2003 Dec; 84(7):822-33. PubMed ID: 14708123
[TBL] [Abstract][Full Text] [Related]
13. Comparative transcriptome analysis of Desulfovibrio vulgaris grown in planktonic culture and mature biofilm on a steel surface.
Zhang W; Culley DE; Nie L; Scholten JC
Appl Microbiol Biotechnol; 2007 Aug; 76(2):447-57. PubMed ID: 17571259
[TBL] [Abstract][Full Text] [Related]
14. Oxidative stress and heat-shock responses in Desulfovibrio vulgaris by genome-wide transcriptomic analysis.
Zhang W; Culley DE; Hogan M; Vitiritti L; Brockman FJ
Antonie Van Leeuwenhoek; 2006 Jul; 90(1):41-55. PubMed ID: 16680520
[TBL] [Abstract][Full Text] [Related]
15. Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.
Redding AM; Mukhopadhyay A; Joyner DC; Hazen TC; Keasling JD
Brief Funct Genomic Proteomic; 2006 Jun; 5(2):133-43. PubMed ID: 16772278
[TBL] [Abstract][Full Text] [Related]
16. Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM).
Cushman JC; Tillett RL; Wood JA; Branco JM; Schlauch KA
J Exp Bot; 2008; 59(7):1875-94. PubMed ID: 18319238
[TBL] [Abstract][Full Text] [Related]
17. Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions.
Pereira PM; He Q; Xavier AV; Zhou J; Pereira IA; Louro RO
Arch Microbiol; 2008 May; 189(5):451-61. PubMed ID: 18060664
[TBL] [Abstract][Full Text] [Related]
18. Cloning and expression of the MutM gene from obligate anaerobic bacterium Desulfovibrio vulgaris (Miyazaki F).
Sanada H; Nakanishi T; Inoue H; Kitamura M
J Biochem; 2009 Apr; 145(4):525-32. PubMed ID: 19151100
[TBL] [Abstract][Full Text] [Related]
19. Sequential and structural analysis of [NiFe]-hydrogenase-maturation proteins from Desulfovibrio vulgaris Miyazaki F.
Agrawal AG; Voordouw G; Gärtner W
Antonie Van Leeuwenhoek; 2006 Oct; 90(3):281-90. PubMed ID: 16902753
[TBL] [Abstract][Full Text] [Related]
20. Detecting differential and correlated protein expression in label-free shotgun proteomics.
Zhang B; VerBerkmoes NC; Langston MA; Uberbacher E; Hettich RL; Samatova NF
J Proteome Res; 2006 Nov; 5(11):2909-18. PubMed ID: 17081042
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]