495 related articles for article (PubMed ID: 16311586)
1. Identification of post-translational modifications by blind search of mass spectra.
Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
Nat Biotechnol; 2005 Dec; 23(12):1562-7. PubMed ID: 16311586
[TBL] [Abstract][Full Text] [Related]
2. Identification of post-translational modifications via blind search of mass-spectra.
Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
Proc IEEE Comput Syst Bioinform Conf; 2005; ():157-66. PubMed ID: 16447973
[TBL] [Abstract][Full Text] [Related]
3. Prediction of novel modifications by unrestrictive search of tandem mass spectra.
Na S; Paek E
J Proteome Res; 2009 Oct; 8(10):4418-27. PubMed ID: 19658439
[TBL] [Abstract][Full Text] [Related]
4. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
5. Sequential interval motif search: unrestricted database surveys of global MS/MS data sets for detection of putative post-translational modifications.
Liu J; Erassov A; Halina P; Canete M; Nguyen DV; Chung C; Cagney G; Ignatchenko A; Fong V; Emili A
Anal Chem; 2008 Oct; 80(20):7846-54. PubMed ID: 18788753
[TBL] [Abstract][Full Text] [Related]
6. Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase.
Seo J; Jeong J; Kim YM; Hwang N; Paek E; Lee KJ
J Proteome Res; 2008 Feb; 7(2):587-602. PubMed ID: 18183946
[TBL] [Abstract][Full Text] [Related]
7. Semi-supervised LC/MS alignment for differential proteomics.
Fischer B; Grossmann J; Roth V; Gruissem W; Baginsky S; Buhmann JM
Bioinformatics; 2006 Jul; 22(14):e132-40. PubMed ID: 16873463
[TBL] [Abstract][Full Text] [Related]
8. Peptide sequence tag-based blind identification of post-translational modifications with point process model.
Liu C; Yan B; Song Y; Xu Y; Cai L
Bioinformatics; 2006 Jul; 22(14):e307-13. PubMed ID: 16873487
[TBL] [Abstract][Full Text] [Related]
9. Intensity-based protein identification by machine learning from a library of tandem mass spectra.
Elias JE; Gibbons FD; King OD; Roth FP; Gygi SP
Nat Biotechnol; 2004 Feb; 22(2):214-9. PubMed ID: 14730315
[TBL] [Abstract][Full Text] [Related]
10. Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data.
Chamrad DC; Körting G; Schäfer H; Stephan C; Thiele H; Apweiler R; Meyer HE; Marcus K; Blüggel M
Proteomics; 2006 Sep; 6(18):5048-58. PubMed ID: 16912973
[TBL] [Abstract][Full Text] [Related]
11. A geometric approach for the alignment of liquid chromatography-mass spectrometry data.
Lange E; Gröpl C; Schulz-Trieglaff O; Leinenbach A; Huber C; Reinert K
Bioinformatics; 2007 Jul; 23(13):i273-81. PubMed ID: 17646306
[TBL] [Abstract][Full Text] [Related]
12. Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
Falkner J; Andrews P
Bioinformatics; 2005 May; 21(10):2177-84. PubMed ID: 15746284
[TBL] [Abstract][Full Text] [Related]
13. Phosphoproteomics by mass spectrometry and classical protein chemistry approaches.
Salih E
Mass Spectrom Rev; 2005; 24(6):828-46. PubMed ID: 15538747
[TBL] [Abstract][Full Text] [Related]
14. Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.
Gaucher SP; Redding AM; Mukhopadhyay A; Keasling JD; Singh AK
J Proteome Res; 2008 Jun; 7(6):2320-31. PubMed ID: 18416566
[TBL] [Abstract][Full Text] [Related]
15. Sub-speciating Campylobacter jejuni by proteomic analysis of its protein biomarkers and their post-translational modifications.
Fagerquist CK; Bates AH; Heath S; King BC; Garbus BR; Harden LA; Miller WG
J Proteome Res; 2006 Oct; 5(10):2527-38. PubMed ID: 17022624
[TBL] [Abstract][Full Text] [Related]
16. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
Ning K; Ng HK; Leong HW
Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
[TBL] [Abstract][Full Text] [Related]
17. swissPIT: a novel approach for pipelined analysis of mass spectrometry data.
Quandt A; Hernandez P; Masselot A; Hernandez C; Maffioletti S; Pautasso C; Appel RD; Lisacek F
Bioinformatics; 2008 Jun; 24(11):1416-7. PubMed ID: 18436540
[TBL] [Abstract][Full Text] [Related]
18. Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.
Feng J; Naiman DQ; Cooper B
Bioinformatics; 2007 Sep; 23(17):2210-7. PubMed ID: 17510167
[TBL] [Abstract][Full Text] [Related]
19. Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline.
Dowsey AW; Dunn MJ; Yang GZ
Bioinformatics; 2008 Apr; 24(7):950-7. PubMed ID: 18310057
[TBL] [Abstract][Full Text] [Related]
20. A point-process model for rapid identification of post-translational modifications.
Yan B; Zhou T; Wang P; Liu Z; Emanuele VA; Olman V; Xu Y
Pac Symp Biocomput; 2006; ():327-38. PubMed ID: 17094250
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
