148 related articles for article (PubMed ID: 16328949)
1. Randomized and parallel algorithms for distance matrix calculations in multiple sequence alignment.
Rajasekaran S; Thapar V; Dave H; Huang CH
J Clin Monit Comput; 2005 Oct; 19(4-5):351-9. PubMed ID: 16328949
[TBL] [Abstract][Full Text] [Related]
2. A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment.
Rubio-Largo Á; Castelli M; Vanneschi L; Vega-Rodríguez MA
J Comput Biol; 2018 Sep; 25(9):1009-1022. PubMed ID: 29671616
[TBL] [Abstract][Full Text] [Related]
3. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment.
Kim T; Joo H
BMC Bioinformatics; 2010 Sep; 11():467. PubMed ID: 20849574
[TBL] [Abstract][Full Text] [Related]
4. High-speed multiple sequence alignment on a reconfigurable platform.
Oliver T; Schmidt B; Maskell D; Nathan D; Clemens R
Int J Bioinform Res Appl; 2006; 2(4):394-406. PubMed ID: 18048180
[TBL] [Abstract][Full Text] [Related]
5. Multiple sequence alignment in parallel on a workstation cluster.
Ebedes J; Datta A
Bioinformatics; 2004 May; 20(7):1193-5. PubMed ID: 14764554
[TBL] [Abstract][Full Text] [Related]
6. Novel hybrid genetic algorithm for progressive multiple sequence alignment.
Afridi MI
Int J Bioinform Res Appl; 2013; 9(6):614-24. PubMed ID: 24084242
[TBL] [Abstract][Full Text] [Related]
7. Grammar-based distance in progressive multiple sequence alignment.
Russell DJ; Otu HH; Sayood K
BMC Bioinformatics; 2008 Jul; 9():306. PubMed ID: 18616828
[TBL] [Abstract][Full Text] [Related]
8. Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI.
González-Domínguez J
Methods Mol Biol; 2021; 2231():39-47. PubMed ID: 33289885
[TBL] [Abstract][Full Text] [Related]
9. Multiple protein sequence alignment with MSAProbs.
Liu Y; Schmidt B
Methods Mol Biol; 2014; 1079():211-8. PubMed ID: 24170405
[TBL] [Abstract][Full Text] [Related]
10. Improved Hidden Markov Model training for multiple sequence alignment by a particle swarm optimization-evolutionary algorithm hybrid.
Rasmussen TK; Krink T
Biosystems; 2003 Nov; 72(1-2):5-17. PubMed ID: 14642655
[TBL] [Abstract][Full Text] [Related]
11. Reducing Alignment Time Complexity of Ultra-Large Sets of Sequences.
Rubio-Largo Á; Vanneschi L; Castelli M; Vega-Rodríguez MA
J Comput Biol; 2017 Nov; 24(11):1144-1154. PubMed ID: 28686466
[TBL] [Abstract][Full Text] [Related]
12. Enumerating suboptimal alignments of multiple biological sequences efficiently.
Shibuya T; Imai H
Pac Symp Biocomput; 1997; ():409-20. PubMed ID: 9390310
[TBL] [Abstract][Full Text] [Related]
13. Protein multiple sequence alignment by hybrid bio-inspired algorithms.
Cutello V; Nicosia G; Pavone M; Prizzi I
Nucleic Acids Res; 2011 Mar; 39(6):1980-92. PubMed ID: 21071394
[TBL] [Abstract][Full Text] [Related]
14. Optimal pairwise alignment of fixed protein structures in subquadratic time.
Poleksic A
J Bioinform Comput Biol; 2011 Jun; 9(3):367-82. PubMed ID: 21714130
[TBL] [Abstract][Full Text] [Related]
15. An improved distance matrix computation algorithm for multicore clusters.
Al-Neama MW; Reda NM; Ghaleb FF
Biomed Res Int; 2014; 2014():406178. PubMed ID: 25013779
[TBL] [Abstract][Full Text] [Related]
16. M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic.
Zambrano-Vega C; Nebro AJ; García-Nieto J; Aldana-Montes JF
Bioinformatics; 2017 Oct; 33(19):3011-3017. PubMed ID: 28541404
[TBL] [Abstract][Full Text] [Related]
17. A Modified Multiple Alignment Fast Fourier Transform with Higher Efficiency.
Zheng W; Li K; Li K; So HC
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):634-645. PubMed ID: 26890922
[TBL] [Abstract][Full Text] [Related]
18. PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.
Sahraeian SM; Yoon BJ
Nucleic Acids Res; 2010 Aug; 38(15):4917-28. PubMed ID: 20413579
[TBL] [Abstract][Full Text] [Related]
19. CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs.
Hung CL; Lin YS; Lin CY; Chung YC; Chung YF
Comput Biol Chem; 2015 Oct; 58():62-8. PubMed ID: 26052076
[TBL] [Abstract][Full Text] [Related]
20. Optimised fine and coarse parallelism for sequence homology search.
Meng X; Chaudhary V
Int J Bioinform Res Appl; 2006; 2(4):430-41. PubMed ID: 18048183
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
