424 related articles for article (PubMed ID: 16332745)
1. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.
Ashelford KE; Chuzhanova NA; Fry JC; Jones AJ; Weightman AJ
Appl Environ Microbiol; 2005 Dec; 71(12):7724-36. PubMed ID: 16332745
[TBL] [Abstract][Full Text] [Related]
2. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.
Ashelford KE; Chuzhanova NA; Fry JC; Jones AJ; Weightman AJ
Appl Environ Microbiol; 2006 Sep; 72(9):5734-41. PubMed ID: 16957188
[TBL] [Abstract][Full Text] [Related]
3. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
DeSantis TZ; Hugenholtz P; Larsen N; Rojas M; Brodie EL; Keller K; Huber T; Dalevi D; Hu P; Andersen GL
Appl Environ Microbiol; 2006 Jul; 72(7):5069-72. PubMed ID: 16820507
[TBL] [Abstract][Full Text] [Related]
4. V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets.
Hartmann M; Howes CG; Veldre V; Schneider S; Vaishampayan PA; Yannarell AC; Quince C; Johansson P; Björkroth KJ; Abarenkov K; Hallam SJ; Mohn WW; Nilsson RH
FEMS Microbiol Lett; 2011 Jun; 319(2):140-5. PubMed ID: 21453324
[TBL] [Abstract][Full Text] [Related]
5. Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.
Schäffer AA; McVeigh R; Robbertse B; Schoch CL; Johnston A; Underwood BA; Karsch-Mizrachi I; Nawrocki EP
BMC Bioinformatics; 2021 Aug; 22(1):400. PubMed ID: 34384346
[TBL] [Abstract][Full Text] [Related]
6. 5S ribosomal ribonucleic acid sequences in Bacteroides and Fusobacterium: evolutionary relationships within these genera and among eubacteria in general.
Van den Eynde H; De Baere R; Shah HN; Gharbia SE; Fox GE; Michalik J; Van de Peer Y; De Wachter R
Int J Syst Bacteriol; 1989 Jan; 39(1):78-84. PubMed ID: 11542181
[TBL] [Abstract][Full Text] [Related]
7. Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species.
Turenne CY; Tschetter L; Wolfe J; Kabani A
J Clin Microbiol; 2001 Oct; 39(10):3637-48. PubMed ID: 11574585
[TBL] [Abstract][Full Text] [Related]
8. A new computational method for detection of chimeric 16S rRNA artifacts generated by PCR amplification from mixed bacterial populations.
Komatsoulis GA; Waterman MS
Appl Environ Microbiol; 1997 Jun; 63(6):2338-46. PubMed ID: 9172353
[TBL] [Abstract][Full Text] [Related]
9. PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database.
Ashelford KE; Weightman AJ; Fry JC
Nucleic Acids Res; 2002 Aug; 30(15):3481-9. PubMed ID: 12140334
[TBL] [Abstract][Full Text] [Related]
10. The sequence of the single 16S rRNA gene of the thermophilic eubacterium Rhodothermus marinus reveals a distant relationship to the group containing Flexibacter, Bacteroides, and Cytophaga species.
Andrésson OS; Fridjónsson OH
J Bacteriol; 1994 Oct; 176(20):6165-9. PubMed ID: 7928984
[TBL] [Abstract][Full Text] [Related]
11. Phylogeny of the defined murine microbiota: altered Schaedler flora.
Dewhirst FE; Chien CC; Paster BJ; Ericson RL; Orcutt RP; Schauer DB; Fox JG
Appl Environ Microbiol; 1999 Aug; 65(8):3287-92. PubMed ID: 10427008
[TBL] [Abstract][Full Text] [Related]
12. A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences.
Zo YG; Colwell RR
J Microbiol Methods; 2008 Feb; 72(2):166-79. PubMed ID: 18155790
[TBL] [Abstract][Full Text] [Related]
13. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences.
Wright ES; Yilmaz LS; Noguera DR
Appl Environ Microbiol; 2012 Feb; 78(3):717-25. PubMed ID: 22101057
[TBL] [Abstract][Full Text] [Related]
14. STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database.
Zhu D; Vaishampayan PA; Venkateswaran K; Fox GE
Microb Ecol; 2011 Apr; 61(3):669-75. PubMed ID: 21113709
[TBL] [Abstract][Full Text] [Related]
15. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy.
Gao X; Lin H; Revanna K; Dong Q
BMC Bioinformatics; 2017 May; 18(1):247. PubMed ID: 28486927
[TBL] [Abstract][Full Text] [Related]
16. Organization of ribosomal RNA genes from the footrot pathogen Dichelobacter nodosus.
La Fontaine S; Rood JI
Microbiology (Reading); 1996 Apr; 142 ( Pt 4)():889-899. PubMed ID: 8936315
[TBL] [Abstract][Full Text] [Related]
17. Evaluation of 16S rRNA sequencing and reevaluation of a short biochemical scheme for identification of clinically significant Bacteroides species.
Song Y; Liu C; Bolanos M; Lee J; McTeague M; Finegold SM
J Clin Microbiol; 2005 Apr; 43(4):1531-7. PubMed ID: 15814962
[TBL] [Abstract][Full Text] [Related]
18. A tool box strategy using Bacteroides genetic markers to differentiate human from non-human sources of fecal contamination in natural water.
Kabiri L; Alum A; Rock C; McLain JE; Abbaszadegan M
Sci Total Environ; 2016 Dec; 572():897-905. PubMed ID: 27507085
[TBL] [Abstract][Full Text] [Related]
19. Evidence that Bacteroides nodosus belongs in subgroup gamma of the class Proteobacteria, not in the genus Bacteroides: partial sequence analysis of a B. nodosus 16S rRNA gene.
La Fontaine S; Rood JI
Int J Syst Bacteriol; 1990 Apr; 40(2):154-9. PubMed ID: 2223609
[TBL] [Abstract][Full Text] [Related]
20. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]