168 related articles for article (PubMed ID: 16356924)
1. Integrating probe-level expression changes across generations of Affymetrix arrays.
Elo LL; Lahti L; Skottman H; Kyläniemi M; Lahesmaa R; Aittokallio T
Nucleic Acids Res; 2005 Dec; 33(22):e193. PubMed ID: 16356924
[TBL] [Abstract][Full Text] [Related]
2. Combining gene expression data from different generations of oligonucleotide arrays.
Hwang KB; Kong SW; Greenberg SA; Park PJ
BMC Bioinformatics; 2004 Oct; 5():159. PubMed ID: 15504239
[TBL] [Abstract][Full Text] [Related]
3. Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling.
Bhattacharya S; Mariani TJ
Nucleic Acids Res; 2005 Oct; 33(18):e157. PubMed ID: 16224098
[TBL] [Abstract][Full Text] [Related]
4. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
Carter SL; Eklund AC; Mecham BH; Kohane IS; Szallasi Z
BMC Bioinformatics; 2005 Apr; 6():107. PubMed ID: 15850491
[TBL] [Abstract][Full Text] [Related]
5. Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays.
Barrera L; Benner C; Tao YC; Winzeler E; Zhou Y
BMC Bioinformatics; 2004 Apr; 5():42. PubMed ID: 15099405
[TBL] [Abstract][Full Text] [Related]
6. Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.
Jaksik R; Polańska J; Herok R; Rzeszowska-Wolny J
Acta Biochim Pol; 2009; 56(2):271-7. PubMed ID: 19436837
[TBL] [Abstract][Full Text] [Related]
7. Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.
Mecham BH; Klus GT; Strovel J; Augustus M; Byrne D; Bozso P; Wetmore DZ; Mariani TJ; Kohane IS; Szallasi Z
Nucleic Acids Res; 2004 May; 32(9):e74. PubMed ID: 15161944
[TBL] [Abstract][Full Text] [Related]
8. Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.
Barnes M; Freudenberg J; Thompson S; Aronow B; Pavlidis P
Nucleic Acids Res; 2005; 33(18):5914-23. PubMed ID: 16237126
[TBL] [Abstract][Full Text] [Related]
9. Cross platform microarray analysis for robust identification of differentially expressed genes.
Bosotti R; Locatelli G; Healy S; Scacheri E; Sartori L; Mercurio C; Calogero R; Isacchi A
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S5. PubMed ID: 17430572
[TBL] [Abstract][Full Text] [Related]
10. Reproducibility of gene expression across generations of Affymetrix microarrays.
Nimgaonkar A; Sanoudou D; Butte AJ; Haslett JN; Kunkel LM; Beggs AH; Kohane IS
BMC Bioinformatics; 2003 Jun; 4():27. PubMed ID: 12823866
[TBL] [Abstract][Full Text] [Related]
11. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Alberts R; Terpstra P; Hardonk M; Bystrykh LV; de Haan G; Breitling R; Nap JP; Jansen RC
BMC Bioinformatics; 2007 Apr; 8():132. PubMed ID: 17448222
[TBL] [Abstract][Full Text] [Related]
12. Inter-platform comparability of microarrays in acute lymphoblastic leukemia.
Mitchell SA; Brown KM; Henry MM; Mintz M; Catchpoole D; LaFleur B; Stephan DA
BMC Genomics; 2004 Sep; 5():71. PubMed ID: 15387886
[TBL] [Abstract][Full Text] [Related]
13. Exploring drug action on Mycobacterium tuberculosis using affymetrix oligonucleotide genechips.
Fu LM
Tuberculosis (Edinb); 2006 Mar; 86(2):134-43. PubMed ID: 16246625
[TBL] [Abstract][Full Text] [Related]
14. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
15. Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.
Lu J; Lee JC; Salit ML; Cam MC
BMC Bioinformatics; 2007 Mar; 8():108. PubMed ID: 17394657
[TBL] [Abstract][Full Text] [Related]
16. Detection of transcriptional difference of porcine imprinted genes using different microarray platforms.
Tsai S; Mir B; Martin AC; Estrada JL; Bischoff SR; Hsieh WP; Cassady JP; Freking BA; Nonneman DJ; Rohrer GA; Piedrahita JA
BMC Genomics; 2006 Dec; 7():328. PubMed ID: 17194308
[TBL] [Abstract][Full Text] [Related]
17. Performance comparison of multiple microarray platforms for gene expression profiling.
Liu F; Kuo WP; Jenssen TK; Hovig E
Methods Mol Biol; 2012; 802():141-55. PubMed ID: 22130879
[TBL] [Abstract][Full Text] [Related]
18. Expression profiling using affymetrix genechip probe arrays.
Schinke-Braun M; Couget JA
Methods Mol Biol; 2007; 366():13-40. PubMed ID: 17568117
[TBL] [Abstract][Full Text] [Related]
19. Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
Yu H; Wang F; Tu K; Xie L; Li YY; Li YX
BMC Bioinformatics; 2007 Jun; 8():194. PubMed ID: 17559689
[TBL] [Abstract][Full Text] [Related]
20. A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.
Kuo WP; Liu F; Trimarchi J; Punzo C; Lombardi M; Sarang J; Whipple ME; Maysuria M; Serikawa K; Lee SY; McCrann D; Kang J; Shearstone JR; Burke J; Park DJ; Wang X; Rector TL; Ricciardi-Castagnoli P; Perrin S; Choi S; Bumgarner R; Kim JH; Short GF; Freeman MW; Seed B; Jensen R; Church GM; Hovig E; Cepko CL; Park P; Ohno-Machado L; Jenssen TK
Nat Biotechnol; 2006 Jul; 24(7):832-40. PubMed ID: 16823376
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
