These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

223 related articles for article (PubMed ID: 16361336)

  • 1. Can conformational change be described by only a few normal modes?
    Petrone P; Pande VS
    Biophys J; 2006 Mar; 90(5):1583-93. PubMed ID: 16361336
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Widening the protein crystallization bottleneck.
    Doerr A
    Nat Methods; 2006 Dec; 3(12):961. PubMed ID: 17190005
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure and aggregation of a helix-forming polymer.
    Magee JE; Song Z; Curtis RA; Lue L
    J Chem Phys; 2007 Apr; 126(14):144911. PubMed ID: 17444747
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Adsorption-induced conformational changes in protein diffusion-aggregation surface assemblies.
    Pellenc D; Gallet O; Berry H
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Nov; 72(5 Pt 1):051904. PubMed ID: 16383642
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evolutionary Conserved Positions Define Protein Conformational Diversity.
    SaldaƱo TE; Monzon AM; Parisi G; Fernandez-Alberti S
    PLoS Comput Biol; 2016 Mar; 12(3):e1004775. PubMed ID: 27008419
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes.
    Bray JK; Weiss DR; Levitt M
    Biophys J; 2011 Dec; 101(12):2966-9. PubMed ID: 22208195
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein complexes: structure prediction challenges for the 21st century.
    Aloy P; Pichaud M; Russell RB
    Curr Opin Struct Biol; 2005 Feb; 15(1):15-22. PubMed ID: 15718128
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes.
    Zheng W; Brooks BR
    Biophys J; 2006 Jun; 90(12):4327-36. PubMed ID: 16565046
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A universal TANGO?
    Pande VS
    Nat Biotechnol; 2004 Oct; 22(10):1240-1. PubMed ID: 15470460
    [No Abstract]   [Full Text] [Related]  

  • 10. Ligand-induced conformational change of a protein reproduced by a linear combination of displacement vectors obtained from normal mode analysis.
    Wako H; Endo S
    Biophys Chem; 2011 Dec; 159(2-3):257-66. PubMed ID: 21807453
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A normal mode-based geometric simulation approach for exploring biologically relevant conformational transitions in proteins.
    Ahmed A; Rippmann F; Barnickel G; Gohlke H
    J Chem Inf Model; 2011 Jul; 51(7):1604-22. PubMed ID: 21639141
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Manipulation of conformational change in proteins by single-residue perturbations.
    Atilgan C; Gerek ZN; Ozkan SB; Atilgan AR
    Biophys J; 2010 Aug; 99(3):933-43. PubMed ID: 20682272
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Graph theoretic properties of networks formed by the Delaunay tessellation of protein structures.
    Taylor TJ; Vaisman II
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Apr; 73(4 Pt 1):041925. PubMed ID: 16711854
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Spectral properties of contact matrix: application to proteins.
    Sadoc JF
    Eur Phys J E Soft Matter; 2005 Nov; 18(3):321-33. PubMed ID: 16292476
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Insights into crowding effects on protein stability from a coarse-grained model.
    Shen VK; Cheung JK; Errington JR; Truskett TM
    J Biomech Eng; 2009 Jul; 131(7):071002. PubMed ID: 19640127
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein aggregation in silico.
    Cellmer T; Bratko D; Prausnitz JM; Blanch HW
    Trends Biotechnol; 2007 Jun; 25(6):254-61. PubMed ID: 17433843
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multicanonical study of coarse-grained off-lattice models for folding heteropolymers.
    Bachmann M; Arkin H; Janke W
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Mar; 71(3 Pt 1):031906. PubMed ID: 15903458
    [TBL] [Abstract][Full Text] [Related]  

  • 18. REACH coarse-grained normal mode analysis of protein dimer interaction dynamics.
    Moritsugu K; Kurkal-Siebert V; Smith JC
    Biophys J; 2009 Aug; 97(4):1158-67. PubMed ID: 19686664
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular complexes at a glance: automated generation of two-dimensional complex diagrams.
    Stierand K; Maass PC; Rarey M
    Bioinformatics; 2006 Jul; 22(14):1710-6. PubMed ID: 16632493
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular simulation of protein aggregation.
    Bratko D; Cellmer T; Prausnitz JM; Blanch HW
    Biotechnol Bioeng; 2007 Jan; 96(1):1-8. PubMed ID: 17136749
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.