These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

338 related articles for article (PubMed ID: 16374872)

  • 1. The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study.
    Bonet J; Caltabiano G; Khan AK; Johnston MA; Corbí C; Gómez A; Rovira X; Teyra J; Villà-Freixa J
    Proteins; 2006 Apr; 63(1):65-77. PubMed ID: 16374872
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: deciphering the effect of intermolecular interactions on computational structure prediction of the p27Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex.
    Verkhivker GM
    Proteins; 2005 Feb; 58(3):706-16. PubMed ID: 15609350
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exploring the charge space of protein-protein association: a proteomic study.
    Shaul Y; Schreiber G
    Proteins; 2005 Aug; 60(3):341-52. PubMed ID: 15887221
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Small-world network approach to identify key residues in protein-protein interaction.
    del Sol A; O'Meara P
    Proteins; 2005 Feb; 58(3):672-82. PubMed ID: 15617065
    [TBL] [Abstract][Full Text] [Related]  

  • 5. QM/MM modeling the Ras-GAP catalyzed hydrolysis of guanosine triphosphate.
    Grigorenko BL; Nemukhin AV; Topol IA; Cachau RE; Burt SK
    Proteins; 2005 Aug; 60(3):495-503. PubMed ID: 15906320
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis of sequence-reactivity space for protein-protein interactions.
    Li J; Yi Z; Laskowski MC; Laskowski M; Bailey-Kellogg C
    Proteins; 2005 Feb; 58(3):661-71. PubMed ID: 15624216
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of the interaction site on the surface of an isolated protein structure by analysis of side chain energy scores.
    Liang S; Zhang J; Zhang S; Guo H
    Proteins; 2004 Nov; 57(3):548-57. PubMed ID: 15382230
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Molecular mechanisms of pH-driven conformational transitions of proteins: insights from continuum electrostatics calculations of acid unfolding.
    Fitch CA; Whitten ST; Hilser VJ; García-Moreno E B
    Proteins; 2006 Apr; 63(1):113-26. PubMed ID: 16400648
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Computational study of IAG-nucleoside hydrolase: determination of the preferred ground state conformation and the role of active site residues.
    Mazumder-Shivakumar D; Bruice TC
    Biochemistry; 2005 May; 44(21):7805-17. PubMed ID: 15909995
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Acidic groups docked to well defined wetted pockets at the core of the binding interface: a tale of scoring and missing protein interactions in CAPRI.
    Bueno M; Camacho CJ
    Proteins; 2007 Dec; 69(4):786-92. PubMed ID: 17803211
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A novel computational analysis of ligand-induced conformational changes in the ATP binding sites of cyclin dependent kinases.
    Subramanian J; Sharma S; B-Rao C
    J Med Chem; 2006 Sep; 49(18):5434-41. PubMed ID: 16942017
    [TBL] [Abstract][Full Text] [Related]  

  • 13. COMBINE analysis of the specificity of binding of Ras proteins to their effectors.
    Tomić S; Bertosa B; Wang T; Wade RC
    Proteins; 2007 May; 67(2):435-47. PubMed ID: 17295314
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues.
    Terashi G; Takeda-Shitaka M; Takaya D; Komatsu K; Umeyama H
    Proteins; 2005 Aug; 60(2):289-95. PubMed ID: 15981245
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Docking of protein molecular surfaces with evolutionary trace analysis.
    Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
    Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces.
    Ben-Shimon A; Eisenstein M
    J Mol Biol; 2005 Aug; 351(2):309-26. PubMed ID: 16019028
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The barrier for proton transport in aquaporins as a challenge for electrostatic models: the role of protein relaxation in mutational calculations.
    Kato M; Pisliakov AV; Warshel A
    Proteins; 2006 Sep; 64(4):829-44. PubMed ID: 16779836
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.