These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

72 related articles for article (PubMed ID: 16380943)

  • 1. A search algorithm for fixed-composition protein design.
    Hom GK; Mayo SL
    J Comput Chem; 2006 Feb; 27(3):375-8. PubMed ID: 16380943
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An efficient algorithm for multistate protein design based on FASTER.
    Allen BD; Mayo SL
    J Comput Chem; 2010 Apr; 31(5):904-16. PubMed ID: 19637210
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exact rotamer optimization for protein design.
    Gordon DB; Hom GK; Mayo SL; Pierce NA
    J Comput Chem; 2003 Jan; 24(2):232-43. PubMed ID: 12497602
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational design of a single amino acid sequence that can switch between two distinct protein folds.
    Ambroggio XI; Kuhlman B
    J Am Chem Soc; 2006 Feb; 128(4):1154-61. PubMed ID: 16433531
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dead-end elimination with backbone flexibility.
    Georgiev I; Donald BR
    Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Dramatic performance enhancements for the FASTER optimization algorithm.
    Allen BD; Mayo SL
    J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploration of two-dimensional hydrophobic-polar lattice model by combining local search with elastic net algorithm.
    Guo YZ; Feng EM; Wang Y
    J Chem Phys; 2006 Oct; 125(15):154102. PubMed ID: 17059234
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design.
    Voigt CA; Gordon DB; Mayo SL
    J Mol Biol; 2000 Jun; 299(3):789-803. PubMed ID: 10835284
    [TBL] [Abstract][Full Text] [Related]  

  • 10. COPid: composition based protein identification.
    Kumar M; Thakur V; Raghava GP
    In Silico Biol; 2008; 8(2):121-8. PubMed ID: 18928200
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Preprocessing of rotamers for protein design calculations.
    Shah PS; Hom GK; Mayo SL
    J Comput Chem; 2004 Nov; 25(14):1797-800. PubMed ID: 15362137
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J; Deremble C; Carbone A
    Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach.
    Li FM; Li QZ
    Amino Acids; 2008 Jan; 34(1):119-25. PubMed ID: 17514493
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational protein design with side-chain conformational entropy.
    Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
    Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Monte Carlo sampling method of amino acid sequences adaptable to given main-chain atoms in the proteins.
    Ogata K; Soejima K; Higo J
    J Biochem; 2006 Oct; 140(4):543-52. PubMed ID: 16945938
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exploring zipping and assembly as a protein folding principle.
    Voelz VA; Dill KA
    Proteins; 2007 Mar; 66(4):877-88. PubMed ID: 17154424
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Prediction of protein homo-oligomer types by pseudo amino acid composition: Approached with an improved feature extraction and Naive Bayes Feature Fusion.
    Zhang SW; Pan Q; Zhang HC; Shao ZC; Shi JY
    Amino Acids; 2006 Jun; 30(4):461-8. PubMed ID: 16773245
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational protein design: software implementation, parameter optimization, and performance of a simple model.
    Schmidt Am Busch M; Lopes A; Mignon D; Simonson T
    J Comput Chem; 2008 May; 29(7):1092-102. PubMed ID: 18069664
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes.
    Xiao X; Lin WZ; Chou KC
    J Comput Chem; 2008 Sep; 29(12):2018-24. PubMed ID: 18381630
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.