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11. The MetaCyc Database. Karp PD; Riley M; Paley SM; Pellegrini-Toole A Nucleic Acids Res; 2002 Jan; 30(1):59-61. PubMed ID: 11752254 [TBL] [Abstract][Full Text] [Related]
12. Using the MetaCyc pathway database and the BioCyc database collection. Caspi R; Karp PD Curr Protoc Bioinformatics; 2007 Dec; Chapter 1():1.17.1-1.17.51. PubMed ID: 18428679 [TBL] [Abstract][Full Text] [Related]
13. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Karp PD; Ouzounis CA; Moore-Kochlacs C; Goldovsky L; Kaipa P; Ahrén D; Tsoka S; Darzentas N; Kunin V; López-Bigas N Nucleic Acids Res; 2005; 33(19):6083-9. PubMed ID: 16246909 [TBL] [Abstract][Full Text] [Related]
14. Putting The Plant Metabolic Network pathway databases to work: going offline to gain new capabilities. Dreher K Methods Mol Biol; 2014; 1083():151-71. PubMed ID: 24218215 [TBL] [Abstract][Full Text] [Related]
15. A survey of metabolic databases emphasizing the MetaCyc family. Karp PD; Caspi R Arch Toxicol; 2011 Sep; 85(9):1015-33. PubMed ID: 21523460 [TBL] [Abstract][Full Text] [Related]
16. The challenge of constructing, classifying, and representing metabolic pathways. Caspi R; Dreher K; Karp PD FEMS Microbiol Lett; 2013 Aug; 345(2):85-93. PubMed ID: 23746312 [TBL] [Abstract][Full Text] [Related]
17. Prediction of trehalose-metabolic pathway and comparative analysis of KEGG, MetaCyc, and RAST databases based on complete genome of Variovorax sp. PAMC28711. Shrestha P; Kim MS; Elbasani E; Kim JD; Oh TJ BMC Genom Data; 2022 Jan; 23(1):4. PubMed ID: 34991451 [TBL] [Abstract][Full Text] [Related]
18. A systematic comparison of the MetaCyc and KEGG pathway databases. Altman T; Travers M; Kothari A; Caspi R; Karp PD BMC Bioinformatics; 2013 Mar; 14():112. PubMed ID: 23530693 [TBL] [Abstract][Full Text] [Related]
19. Computational Metabolomics Operations at BioCyc.org. Karp PD; Billington R; Holland TA; Kothari A; Krummenacker M; Weaver D; Latendresse M; Paley S Metabolites; 2015 May; 5(2):291-310. PubMed ID: 26011592 [TBL] [Abstract][Full Text] [Related]
20. Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Karp PD; Paley SM; Krummenacker M; Latendresse M; Dale JM; Lee TJ; Kaipa P; Gilham F; Spaulding A; Popescu L; Altman T; Paulsen I; Keseler IM; Caspi R Brief Bioinform; 2010 Jan; 11(1):40-79. PubMed ID: 19955237 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]