428 related articles for article (PubMed ID: 16388589)
1. Forces driving the binding of homeodomains to DNA.
Dragan AI; Li Z; Makeyeva EN; Milgotina EI; Liu Y; Crane-Robinson C; Privalov PL
Biochemistry; 2006 Jan; 45(1):141-51. PubMed ID: 16388589
[TBL] [Abstract][Full Text] [Related]
2. The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5.
Privalov PL; Jelesarov I; Read CM; Dragan AI; Crane-Robinson C
J Mol Biol; 1999 Dec; 294(4):997-1013. PubMed ID: 10588902
[TBL] [Abstract][Full Text] [Related]
3. Disordered tails of homeodomains facilitate DNA recognition by providing a trade-off between folding and specific binding.
Tóth-Petróczy A; Simon I; Fuxreiter M; Levy Y
J Am Chem Soc; 2009 Oct; 131(42):15084-5. PubMed ID: 19919153
[TBL] [Abstract][Full Text] [Related]
4. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.
Frank DE; Saecker RM; Bond JP; Capp MW; Tsodikov OV; Melcher SE; Levandoski MM; Record MT
J Mol Biol; 1997 Apr; 267(5):1186-206. PubMed ID: 9150406
[TBL] [Abstract][Full Text] [Related]
5. Homeodomain proteins: what governs their ability to recognize specific DNA sequences?
Draganescu A; Levin JR; Tullius TD
J Mol Biol; 1995 Jul; 250(5):595-608. PubMed ID: 7623378
[TBL] [Abstract][Full Text] [Related]
6. Stability and DNA binding ability of the DNA binding domains of interferon regulatory factors 1 and 3.
Hargreaves VV; Makeyeva EN; Dragan AI; Privalov PL
Biochemistry; 2005 Nov; 44(43):14202-9. PubMed ID: 16245936
[TBL] [Abstract][Full Text] [Related]
7. Insights into nonspecific binding of homeodomains from a structure of MATalpha2 bound to DNA.
Aishima J; Wolberger C
Proteins; 2003 Jun; 51(4):544-51. PubMed ID: 12784213
[TBL] [Abstract][Full Text] [Related]
8. Specific binding of hoechst 33258 to the d(CGCAAATTTGCG)2 duplex: calorimetric and spectroscopic studies.
Haq I; Ladbury JE; Chowdhry BZ; Jenkins TC; Chaires JB
J Mol Biol; 1997 Aug; 271(2):244-57. PubMed ID: 9268656
[TBL] [Abstract][Full Text] [Related]
9. Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain.
Oda M; Furukawa K; Ogata K; Sarai A; Nakamura H
J Mol Biol; 1998 Feb; 276(3):571-90. PubMed ID: 9551098
[TBL] [Abstract][Full Text] [Related]
10. The energetics of HMG box interactions with DNA: thermodynamic description of the target DNA duplexes.
Jelesarov I; Crane-Robinson C; Privalov PL
J Mol Biol; 1999 Dec; 294(4):981-95. PubMed ID: 10588901
[TBL] [Abstract][Full Text] [Related]
11. Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level.
Jayaram B; McConnell K; Dixit SB; Das A; Beveridge DL
J Comput Chem; 2002 Jan; 23(1):1-14. PubMed ID: 11913374
[TBL] [Abstract][Full Text] [Related]
12. The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove.
Wojciak JM; Iwahara J; Clubb RT
Nat Struct Biol; 2001 Jan; 8(1):84-90. PubMed ID: 11135677
[TBL] [Abstract][Full Text] [Related]
13. Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition.
Jin E; Katritch V; Olson WK; Kharatisvili M; Abagyan R; Pilch DS
J Mol Biol; 2000 Apr; 298(1):95-110. PubMed ID: 10756107
[TBL] [Abstract][Full Text] [Related]
14. Positively charged residues at the N-terminal arm of the homeodomain are required for efficient DNA binding by homeodomain-leucine zipper proteins.
Palena CM; Tron AE; Bertoncini CW; Gonzalez DH; Chan RL
J Mol Biol; 2001 Apr; 308(1):39-47. PubMed ID: 11302705
[TBL] [Abstract][Full Text] [Related]
15. Energetics of binding the mammalian high mobility group protein HMGA2 to poly(dA-dT)2 and poly(dA)-poly(dT).
Cui T; Wei S; Brew K; Leng F
J Mol Biol; 2005 Sep; 352(3):629-45. PubMed ID: 16109425
[TBL] [Abstract][Full Text] [Related]
16. Conformational changes of the BS2 operator DNA upon complex formation with the Antennapedia homeodomain studied by NMR with 13C/15N-labeled DNA.
Fernández C; Szyperski T; Billeter M; Ono A; Iwai H; Kainosho M; Wüthrich K
J Mol Biol; 1999 Sep; 292(3):609-17. PubMed ID: 10497025
[TBL] [Abstract][Full Text] [Related]
17. Thermodynamics of DNA binding and distortion by the hyperthermophile chromatin protein Sac7d.
Peters WB; Edmondson SP; Shriver JW
J Mol Biol; 2004 Oct; 343(2):339-60. PubMed ID: 15451665
[TBL] [Abstract][Full Text] [Related]
18. Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove.
Wang L; Kumar A; Boykin DW; Bailly C; Wilson WD
J Mol Biol; 2002 Mar; 317(3):361-74. PubMed ID: 11922670
[TBL] [Abstract][Full Text] [Related]
19. Salt bridge exchange binding mechanism between streptavidin and its DNA aptamer--thermodynamics and spectroscopic evidences.
Kuo TC; Lee PC; Tsai CW; Chen WY
J Mol Recognit; 2013 Mar; 26(3):149-59. PubMed ID: 23345105
[TBL] [Abstract][Full Text] [Related]
20. DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution.
Dragan AI; Klass J; Read C; Churchill ME; Crane-Robinson C; Privalov PL
J Mol Biol; 2003 Aug; 331(4):795-813. PubMed ID: 12909011
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
