BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

292 related articles for article (PubMed ID: 16447967)

  • 1. Reconstructing phylogenetic networks using maximum parsimony.
    Nakhleh L; Jin G; Zhao F; Mellor-Crummey J
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():93-102. PubMed ID: 16447967
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient parsimony-based methods for phylogenetic network reconstruction.
    Jin G; Nakhleh L; Snir S; Tuller T
    Bioinformatics; 2007 Jan; 23(2):e123-8. PubMed ID: 17237079
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Inferring phylogenetic networks by the maximum parsimony criterion: a case study.
    Jin G; Nakhleh L; Snir S; Tuller T
    Mol Biol Evol; 2007 Jan; 24(1):324-37. PubMed ID: 17068107
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic.
    Jin G; Nakhleh L; Snir S; Tuller T
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(3):495-505. PubMed ID: 19644176
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
    Wehe A; Bansal MS; Burleigh JG; Eulenstein O
    Bioinformatics; 2008 Jul; 24(13):1540-1. PubMed ID: 18474508
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.
    Than C; Ruths D; Nakhleh L
    BMC Bioinformatics; 2008 Jul; 9():322. PubMed ID: 18662388
    [TBL] [Abstract][Full Text] [Related]  

  • 7. On the quirks of maximum parsimony and likelihood on phylogenetic networks.
    Bryant C; Fischer M; Linz S; Semple C
    J Theor Biol; 2017 Mar; 417():100-108. PubMed ID: 28087420
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Maximum likelihood of phylogenetic networks.
    Jin G; Nakhleh L; Snir S; Tuller T
    Bioinformatics; 2006 Nov; 22(21):2604-11. PubMed ID: 16928736
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reconstructing recombination network from sequence data: the small parsimony problem.
    Nguyen CT; Nguyen NB; Sung WK; Zhang L
    IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):394-402. PubMed ID: 17666759
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mixed integer linear programming for maximum-parsimony phylogeny inference.
    Sridhar S; Lam F; Blelloch GE; Ravi R; Schwartz R
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(3):323-31. PubMed ID: 18670037
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The effect of natural selection on the performance of maximum parsimony.
    Hang D; Torng E; Ofria C; Schmidt TM
    BMC Evol Biol; 2007 Jun; 7():94. PubMed ID: 17592626
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A distance metric for a class of tree-sibling phylogenetic networks.
    Cardona G; Llabrés M; Rosselló F; Valiente G
    Bioinformatics; 2008 Jul; 24(13):1481-8. PubMed ID: 18477576
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phylogenetic trees based on gene content.
    Huson DH; Steel M
    Bioinformatics; 2004 Sep; 20(13):2044-9. PubMed ID: 15044248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Maximum Parsimony on Phylogenetic networks.
    Kannan L; Wheeler WC
    Algorithms Mol Biol; 2012 May; 7(1):9. PubMed ID: 22551229
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Fast Construction of Near Parsimonious Hybridization Networks for Multiple Phylogenetic Trees.
    Mirzaei S; Wu Y
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(3):565-70. PubMed ID: 27295640
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bootstrap-based support of HGT inferred by maximum parsimony.
    Park HJ; Jin G; Nakhleh L
    BMC Evol Biol; 2010 May; 10():131. PubMed ID: 20444286
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reconstructing an ultrametric galled phylogenetic network from a distance matrix.
    Chan HL; Jansson J; Lam TW; Yiu SM
    J Bioinform Comput Biol; 2006 Aug; 4(4):807-32. PubMed ID: 17007069
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computing recombination networks from binary sequences.
    Huson DH; Kloepper TH
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii159-65. PubMed ID: 16204096
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Parsimony, not Bayesian analysis, recovers more stratigraphically congruent phylogenetic trees.
    Sansom RS; Choate PG; Keating JN; Randle E
    Biol Lett; 2018 Jun; 14(6):. PubMed ID: 29925561
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Approximate maximum parsimony and ancestral maximum likelihood.
    Alon N; Chor B; Pardi F; Rapoport A
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(1):183-7. PubMed ID: 20150680
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.