140 related articles for article (PubMed ID: 16447977)
1. Multi-scale hierarchical structure prediction of helical transmembrane proteins.
Chen Z; Xu Y
Proc IEEE Comput Syst Bioinform Conf; 2005; ():203-7. PubMed ID: 16447977
[TBL] [Abstract][Full Text] [Related]
2. Structure prediction of helical transmembrane proteins at two length scales.
Chen Z; Xu Y
J Bioinform Comput Biol; 2006 Apr; 4(2):317-33. PubMed ID: 16819786
[TBL] [Abstract][Full Text] [Related]
3. An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.
Fleishman SJ; Harrington S; Friesner RA; Honig B; Ben-Tal N
Biophys J; 2004 Nov; 87(5):3448-59. PubMed ID: 15339802
[TBL] [Abstract][Full Text] [Related]
4. Modeling membrane proteins utilizing information from silent amino acid substitutions.
Kochva U; Leonov H; Arkin IT; Adams PD
Curr Protoc Bioinformatics; 2004 Feb; Chapter 5():Unit5.3. PubMed ID: 18428728
[TBL] [Abstract][Full Text] [Related]
5. Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.
Lehnert U; Xia Y; Royce TE; Goh CS; Liu Y; Senes A; Yu H; Zhang ZL; Engelman DM; Gerstein M
Q Rev Biophys; 2004 May; 37(2):121-46. PubMed ID: 15999419
[TBL] [Abstract][Full Text] [Related]
6. Assigning transmembrane segments to helices in intermediate-resolution structures.
Enosh A; Fleishman SJ; Ben-Tal N; Halperin D
Bioinformatics; 2004 Aug; 20 Suppl 1():i122-9. PubMed ID: 15262790
[TBL] [Abstract][Full Text] [Related]
7. A periodicity analysis of transmembrane helices.
Leonov H; Arkin IT
Bioinformatics; 2005 Jun; 21(11):2604-10. PubMed ID: 15746278
[TBL] [Abstract][Full Text] [Related]
8. Prediction of the burial status of transmembrane residues of helical membrane proteins.
Park Y; Hayat S; Helms V
BMC Bioinformatics; 2007 Aug; 8():302. PubMed ID: 17708758
[TBL] [Abstract][Full Text] [Related]
9. Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach.
Casciari D; Seeber M; Fanelli F
BMC Bioinformatics; 2006 Jul; 7():340. PubMed ID: 16836758
[TBL] [Abstract][Full Text] [Related]
10. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
Viklund H; Elofsson A
Bioinformatics; 2008 Aug; 24(15):1662-8. PubMed ID: 18474507
[TBL] [Abstract][Full Text] [Related]
11. Energetics and stability of transmembrane helix packing: a replica-exchange simulation with a knowledge-based membrane potential.
Chen Z; Xu Y
Proteins; 2006 Feb; 62(2):539-52. PubMed ID: 16299775
[TBL] [Abstract][Full Text] [Related]
12. Transmembrane helix prediction using amino acid property features and latent semantic analysis.
Ganapathiraju M; Balakrishnan N; Reddy R; Klein-Seetharaman J
BMC Bioinformatics; 2008; 9 Suppl 1(Suppl 1):S4. PubMed ID: 18315857
[TBL] [Abstract][Full Text] [Related]
13. Computational differentiation of N-terminal signal peptides and transmembrane helices.
Yuan Z; Davis MJ; Zhang F; Teasdale RD
Biochem Biophys Res Commun; 2003 Dec; 312(4):1278-83. PubMed ID: 14652012
[TBL] [Abstract][Full Text] [Related]
14. Prediction and simulation of motion in pairs of transmembrane alpha-helices.
Enosh A; Fleishman SJ; Ben-Tal N; Halperin D
Bioinformatics; 2007 Jan; 23(2):e212-8. PubMed ID: 17237094
[TBL] [Abstract][Full Text] [Related]
15. Predicting transmembrane helix packing arrangements using residue contacts and a force-directed algorithm.
Nugent T; Jones DT
PLoS Comput Biol; 2010 Mar; 6(3):e1000714. PubMed ID: 20333233
[TBL] [Abstract][Full Text] [Related]
16. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
Granseth E; Viklund H; Elofsson A
Bioinformatics; 2006 Jul; 22(14):e191-6. PubMed ID: 16873471
[TBL] [Abstract][Full Text] [Related]
17. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
Zhang Y; Kolinski A; Skolnick J
Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
[TBL] [Abstract][Full Text] [Related]
18. Membrane assembly of simple helix homo-oligomers studied via molecular dynamics simulations.
Bu L; Im W; Brooks CL
Biophys J; 2007 Feb; 92(3):854-63. PubMed ID: 17085501
[TBL] [Abstract][Full Text] [Related]
19. Helical packing patterns in membrane and soluble proteins.
Gimpelev M; Forrest LR; Murray D; Honig B
Biophys J; 2004 Dec; 87(6):4075-86. PubMed ID: 15465852
[TBL] [Abstract][Full Text] [Related]
20. TMpro web server and web service: transmembrane helix prediction through amino acid property analysis.
Ganapathiraju M; Jursa CJ; Karimi HA; Klein-Seetharaman J
Bioinformatics; 2007 Oct; 23(20):2795-6. PubMed ID: 17724062
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]