247 related articles for article (PubMed ID: 16452790)
1. Local similarity in RNA secondary structures.
Höchsmann M; Töller T; Giegerich R; Kurtz S
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():159-68. PubMed ID: 16452790
[TBL] [Abstract][Full Text] [Related]
2. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
3. A new distance for high level RNA secondary structure comparison.
Allali J; Sagot MF
IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(1):3-14. PubMed ID: 17044160
[TBL] [Abstract][Full Text] [Related]
4. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
Xu X; Ji Y; Stormo GD
Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
[TBL] [Abstract][Full Text] [Related]
5. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
6. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
Jossinet F; Westhof E
Bioinformatics; 2005 Aug; 21(15):3320-1. PubMed ID: 15905274
[TBL] [Abstract][Full Text] [Related]
7. Parametric alignment of ordered trees.
Wang L; Zhao J
Bioinformatics; 2003 Nov; 19(17):2237-45. PubMed ID: 14630652
[TBL] [Abstract][Full Text] [Related]
8. Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities.
Mokdad A; Leontis NB
Bioinformatics; 2006 Sep; 22(17):2168-70. PubMed ID: 16820430
[TBL] [Abstract][Full Text] [Related]
9. Visualization of barrier tree sequences.
Heine C; Scheuermann G; Flamm C; Hofacker IL; Stadler PF
IEEE Trans Vis Comput Graph; 2006; 12(5):781-8. PubMed ID: 17080800
[TBL] [Abstract][Full Text] [Related]
10. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
[TBL] [Abstract][Full Text] [Related]
11. Pair hidden Markov models on tree structures.
Sakakibara Y
Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
[TBL] [Abstract][Full Text] [Related]
12. ARTS: alignment of RNA tertiary structures.
Dror O; Nussinov R; Wolfson H
Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
[TBL] [Abstract][Full Text] [Related]
13. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
14. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
Kolodny R; Honig B
Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
[TBL] [Abstract][Full Text] [Related]
15. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
16. Pure multiple RNA secondary structure alignments: a progressive profile approach.
Höchsmann M; Voss B; Giegerich R
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(1):53-62. PubMed ID: 17048408
[TBL] [Abstract][Full Text] [Related]
17. Local sequence-structure motifs in RNA.
Backofen R; Will S
J Bioinform Comput Biol; 2004 Dec; 2(4):681-98. PubMed ID: 15617161
[TBL] [Abstract][Full Text] [Related]
18. An algorithm for detecting homologues of known structured RNAs in genomes.
Le SY; Maizel JV; Zhang K
Proc IEEE Comput Syst Bioinform Conf; 2004; ():300-10. PubMed ID: 16448023
[TBL] [Abstract][Full Text] [Related]
19. StructMiner: a tool for alignment and detection of conserved secondary structure.
Yang Q; Blanchette M
Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496
[TBL] [Abstract][Full Text] [Related]
20. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Havgaard JH; Lyngsø RB; Gorodkin J
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
