329 related articles for article (PubMed ID: 16452803)
1. SMASHing regulatory sites in DNA by human-mouse sequence comparisons.
Zavolan M; Socci ND; Rajewsky N; Gaasterlamd T
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():277-86. PubMed ID: 16452803
[TBL] [Abstract][Full Text] [Related]
2. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
Donaldson IJ; Chapman M; Göttgens B
Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
[TBL] [Abstract][Full Text] [Related]
3. Annotating regulatory DNA based on man-mouse genomic comparison.
Dieterich C; Cusack B; Wang H; Rateitschak K; Krause A; Vingron M
Bioinformatics; 2002; 18 Suppl 2():S84-90. PubMed ID: 12385988
[TBL] [Abstract][Full Text] [Related]
4. WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Pavesi G; Zambelli F; Pesole G
BMC Bioinformatics; 2007 Feb; 8():46. PubMed ID: 17286865
[TBL] [Abstract][Full Text] [Related]
5. OMGProm: a database of orthologous mammalian gene promoters.
Palaniswamy SK; Jin VX; Sun H; Davuluri RV
Bioinformatics; 2005 Mar; 21(6):835-6. PubMed ID: 15531605
[TBL] [Abstract][Full Text] [Related]
6. Using PhyloCon to identify conserved regulatory motifs.
Wang T
Curr Protoc Bioinformatics; 2007 Sep; Chapter 2():Unit 2.12. PubMed ID: 18428790
[TBL] [Abstract][Full Text] [Related]
7. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
[TBL] [Abstract][Full Text] [Related]
8. Comparative promoter region analysis powered by CORG.
Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
[TBL] [Abstract][Full Text] [Related]
9. Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A; Tompa M
Nat Biotechnol; 2005 Oct; 23(10):1249-56. PubMed ID: 16211068
[TBL] [Abstract][Full Text] [Related]
10. Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences.
van Passel MW; Luyf AC; van Kampen AH; Bart A; van der Ende A
Bioinformatics; 2005 Jul; 21(13):3053-5. PubMed ID: 15855249
[TBL] [Abstract][Full Text] [Related]
11. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
Berezikov E; Guryev V; Plasterk RH; Cuppen E
Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
[TBL] [Abstract][Full Text] [Related]
12. Evaluating phylogenetic footprinting for human-rodent comparisons.
Sauer T; Shelest E; Wingender E
Bioinformatics; 2006 Feb; 22(4):430-7. PubMed ID: 16332706
[TBL] [Abstract][Full Text] [Related]
13. PEAKS: identification of regulatory motifs by their position in DNA sequences.
Bellora N; Farré D; Mar Albà M
Bioinformatics; 2007 Jan; 23(2):243-4. PubMed ID: 17098773
[TBL] [Abstract][Full Text] [Related]
14. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
15. BLISS: binding site level identification of shared signal-modules in DNA regulatory sequences.
Meng H; Banerjee A; Zhou L
BMC Bioinformatics; 2006 Jun; 7():287. PubMed ID: 16756683
[TBL] [Abstract][Full Text] [Related]
16. VisGenome: visualization of single and comparative genome representations.
Jakubowska J; Hunt E; Chalmers M; McBride M; Dominiczak AF
Bioinformatics; 2007 Oct; 23(19):2641-2. PubMed ID: 17965437
[TBL] [Abstract][Full Text] [Related]
17. A probabilistic method to detect regulatory modules.
Sinha S; van Nimwegen E; Siggia ED
Bioinformatics; 2003; 19 Suppl 1():i292-301. PubMed ID: 12855472
[TBL] [Abstract][Full Text] [Related]
18. The UCSC Genome Browser.
Karolchik D; Hinrichs AS; Kent WJ
Curr Protoc Bioinformatics; 2007 Mar; Chapter 1():Unit 1.4. PubMed ID: 18428780
[TBL] [Abstract][Full Text] [Related]
19. COMPAM :visualization of combining pairwise alignments for multiple genomes.
Lee D; Choi JH; Dalkilic MM; Kim S
Bioinformatics; 2006 Jan; 22(2):242-4. PubMed ID: 16269416
[TBL] [Abstract][Full Text] [Related]
20. Phylogeny based discovery of regulatory elements.
Gertz J; Fay JC; Cohen BA
BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]