202 related articles for article (PubMed ID: 16461635)
1. Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Volik S; Raphael BJ; Huang G; Stratton MR; Bignel G; Murnane J; Brebner JH; Bajsarowicz K; Paris PL; Tao Q; Kowbel D; Lapuk A; Shagin DA; Shagina IA; Gray JW; Cheng JF; de Jong PJ; Pevzner P; Collins C
Genome Res; 2006 Mar; 16(3):394-404. PubMed ID: 16461635
[TBL] [Abstract][Full Text] [Related]
2. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome.
Hampton OA; Den Hollander P; Miller CA; Delgado DA; Li J; Coarfa C; Harris RA; Richards S; Scherer SE; Muzny DM; Gibbs RA; Lee AV; Milosavljevic A
Genome Res; 2009 Feb; 19(2):167-77. PubMed ID: 19056696
[TBL] [Abstract][Full Text] [Related]
3. End-sequence profiling: sequence-based analysis of aberrant genomes.
Volik S; Zhao S; Chin K; Brebner JH; Herndon DR; Tao Q; Kowbel D; Huang G; Lapuk A; Kuo WL; Magrane G; De Jong P; Gray JW; Collins C
Proc Natl Acad Sci U S A; 2003 Jun; 100(13):7696-701. PubMed ID: 12788976
[TBL] [Abstract][Full Text] [Related]
4. A sequence-based survey of the complex structural organization of tumor genomes.
Raphael BJ; Volik S; Yu P; Wu C; Huang G; Linardopoulou EV; Trask BJ; Waldman F; Costello J; Pienta KJ; Mills GB; Bajsarowicz K; Kobayashi Y; Sridharan S; Paris PL; Tao Q; Aerni SJ; Brown RP; Bashir A; Gray JW; Cheng JF; de Jong P; Nefedov M; Ried T; Padilla-Nash HM; Collins CC
Genome Biol; 2008; 9(3):R59. PubMed ID: 18364049
[TBL] [Abstract][Full Text] [Related]
5. Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution.
Bignell GR; Santarius T; Pole JC; Butler AP; Perry J; Pleasance E; Greenman C; Menzies A; Taylor S; Edkins S; Campbell P; Quail M; Plumb B; Matthews L; McLay K; Edwards PA; Rogers J; Wooster R; Futreal PA; Stratton MR
Genome Res; 2007 Sep; 17(9):1296-303. PubMed ID: 17675364
[TBL] [Abstract][Full Text] [Related]
6. Reconstructing tumor genome architectures.
Raphael BJ; Volik S; Collins C; Pevzner PA
Bioinformatics; 2003 Oct; 19 Suppl 2():ii162-71. PubMed ID: 14534186
[TBL] [Abstract][Full Text] [Related]
7. Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes.
Schulte I; Batty EM; Pole JC; Blood KA; Mo S; Cooke SL; Ng C; Howe KL; Chin SF; Brenton JD; Caldas C; Howarth KD; Edwards PA
BMC Genomics; 2012 Dec; 13():719. PubMed ID: 23260012
[TBL] [Abstract][Full Text] [Related]
8. Novel gene rearrangements in transformed breast cells identified by high-resolution breakpoint analysis of chromosomal aberrations.
Unger K; Wienberg J; Riches A; Hieber L; Walch A; Brown A; O'Brien PC; Briscoe C; Gray L; Rodriguez E; Jackl G; Knijnenburg J; Tallini G; Ferguson-Smith M; Zitzelsberger H
Endocr Relat Cancer; 2010 Mar; 17(1):87-98. PubMed ID: 19858224
[TBL] [Abstract][Full Text] [Related]
9. Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.
Jung SH; Shin SH; Yim SH; Choi HS; Lee SH; Chung YJ
Exp Mol Med; 2009 Jul; 41(7):462-70. PubMed ID: 19322034
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
Bashir A; Volik S; Collins C; Bafna V; Raphael BJ
PLoS Comput Biol; 2008 Apr; 4(4):e1000051. PubMed ID: 18404202
[TBL] [Abstract][Full Text] [Related]
11. Chromosome 8 BAC array comparative genomic hybridization and expression analysis identify amplification and overexpression of TRMT12 in breast cancer.
Rodriguez V; Chen Y; Elkahloun A; Dutra A; Pak E; Chandrasekharappa S
Genes Chromosomes Cancer; 2007 Jul; 46(7):694-707. PubMed ID: 17440925
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
[TBL] [Abstract][Full Text] [Related]
13. nFuse: discovery of complex genomic rearrangements in cancer using high-throughput sequencing.
McPherson A; Wu C; Wyatt AW; Shah S; Collins C; Sahinalp SC
Genome Res; 2012 Nov; 22(11):2250-61. PubMed ID: 22745232
[TBL] [Abstract][Full Text] [Related]
14. Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.
Ha KC; Lalonde E; Li L; Cavallone L; Natrajan R; Lambros MB; Mitsopoulos C; Hakas J; Kozarewa I; Fenwick K; Lord CJ; Ashworth A; Vincent-Salomon A; Basik M; Reis-Filho JS; Majewski J; Foulkes WD
BMC Med Genomics; 2011 Oct; 4():75. PubMed ID: 22032724
[TBL] [Abstract][Full Text] [Related]
15. Structural and genic characterization of stable genomic regions in breast cancer: relevance to chemotherapy.
Park NI; Rogan PK; Tarnowski HE; Knoll JH
Mol Oncol; 2012 Jun; 6(3):347-59. PubMed ID: 22342187
[TBL] [Abstract][Full Text] [Related]
16. Detection of novel amplicons in prostate cancer by comprehensive genomic profiling of prostate cancer cell lines using oligonucleotide-based arrayCGH.
Kamradt J; Jung V; Wahrheit K; Tolosi L; Rahnenfuehrer J; Schilling M; Walker R; Davis S; Stoeckle M; Meltzer P; Wullich B
PLoS One; 2007 Aug; 2(8):e769. PubMed ID: 17712417
[TBL] [Abstract][Full Text] [Related]
17. High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.
Jönsson G; Staaf J; Olsson E; Heidenblad M; Vallon-Christersson J; Osoegawa K; de Jong P; Oredsson S; Ringnér M; Höglund M; Borg A
Genes Chromosomes Cancer; 2007 Jun; 46(6):543-58. PubMed ID: 17334996
[TBL] [Abstract][Full Text] [Related]
18. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.
Sun Z; Asmann YW; Kalari KR; Bot B; Eckel-Passow JE; Baker TR; Carr JM; Khrebtukova I; Luo S; Zhang L; Schroth GP; Perez EA; Thompson EA
PLoS One; 2011 Feb; 6(2):e17490. PubMed ID: 21364760
[TBL] [Abstract][Full Text] [Related]
19. Comprehensive copy number profiles of breast cancer cell model genomes.
Shadeo A; Lam WL
Breast Cancer Res; 2006; 8(1):R9. PubMed ID: 16417655
[TBL] [Abstract][Full Text] [Related]
20. Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms.
Kangaspeska S; Hultsch S; Edgren H; Nicorici D; Murumägi A; Kallioniemi O
PLoS One; 2012; 7(10):e48745. PubMed ID: 23119097
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
