1549 related articles for article (PubMed ID: 16477324)
1. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
2. Integrating genomic data to predict transcription factor binding.
Holloway DT; Kon M; DeLisi C
Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
[TBL] [Abstract][Full Text] [Related]
3. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
Siddharthan R
BMC Bioinformatics; 2006 Mar; 7():143. PubMed ID: 16542424
[TBL] [Abstract][Full Text] [Related]
4. PhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs sampling.
Siddharthan R
PLoS Comput Biol; 2008 Aug; 4(8):e1000156. PubMed ID: 18769735
[TBL] [Abstract][Full Text] [Related]
5. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
Liu XS; Brutlag DL; Liu JS
Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
[TBL] [Abstract][Full Text] [Related]
6. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
7. Phylogeny based discovery of regulatory elements.
Gertz J; Fay JC; Cohen BA
BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
[TBL] [Abstract][Full Text] [Related]
8. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
Hughes JD; Estep PW; Tavazoie S; Church GM
J Mol Biol; 2000 Mar; 296(5):1205-14. PubMed ID: 10698627
[TBL] [Abstract][Full Text] [Related]
9. SwissRegulon: a database of genome-wide annotations of regulatory sites.
Pachkov M; Erb I; Molina N; van Nimwegen E
Nucleic Acids Res; 2007 Jan; 35(Database issue):D127-31. PubMed ID: 17130146
[TBL] [Abstract][Full Text] [Related]
10. Regulatory motif finding by logic regression.
Keles S; van der Laan MJ; Vulpe C
Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
[TBL] [Abstract][Full Text] [Related]
11. Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM; Chiang DY; Kellis M; Lander ES; Eisen MB
BMC Evol Biol; 2003 Aug; 3():19. PubMed ID: 12946282
[TBL] [Abstract][Full Text] [Related]
12. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
Marinescu VD; Kohane IS; Riva A
BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
[TBL] [Abstract][Full Text] [Related]
13. Informative priors based on transcription factor structural class improve de novo motif discovery.
Narlikar L; Gordân R; Ohler U; Hartemink AJ
Bioinformatics; 2006 Jul; 22(14):e384-92. PubMed ID: 16873497
[TBL] [Abstract][Full Text] [Related]
14. Identification of functional transcription factor binding sites using closely related Saccharomyces species.
Doniger SW; Huh J; Fay JC
Genome Res; 2005 May; 15(5):701-9. PubMed ID: 15837806
[TBL] [Abstract][Full Text] [Related]
15. A computational "genome walk" technique to identify regulatory interactions in gene networks.
Wagner A
Pac Symp Biocomput; 1998; ():264-78. PubMed ID: 9697188
[TBL] [Abstract][Full Text] [Related]
16. A transdimensional Bayesian model for pattern recognition in DNA sequences.
Li SM; Wakefield J; Self S
Biostatistics; 2008 Oct; 9(4):668-85. PubMed ID: 18349034
[TBL] [Abstract][Full Text] [Related]
17. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.
Qin ZS; McCue LA; Thompson W; Mayerhofer L; Lawrence CE; Liu JS
Nat Biotechnol; 2003 Apr; 21(4):435-9. PubMed ID: 12627170
[TBL] [Abstract][Full Text] [Related]
18. Finding motifs from all sequences with and without binding sites.
Leung HC; Chin FY
Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937
[TBL] [Abstract][Full Text] [Related]
19. Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding.
Chen G; Zhou Q
Biometrics; 2010 Sep; 66(3):694-704. PubMed ID: 19995355
[TBL] [Abstract][Full Text] [Related]
20. Method for identifying transcription factor binding sites in yeast.
Tsai HK; Huang GT; Chou MY; Lu HH; Li WH
Bioinformatics; 2006 Jul; 22(14):1675-81. PubMed ID: 16644789
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]