223 related articles for article (PubMed ID: 16478715)
1. Nucleic acid visualization with UCSF Chimera.
Couch GS; Hendrix DK; Ferrin TE
Nucleic Acids Res; 2006 Feb; 34(4):e29. PubMed ID: 16478715
[TBL] [Abstract][Full Text] [Related]
2. Tools for integrated sequence-structure analysis with UCSF Chimera.
Meng EC; Pettersen EF; Couch GS; Huang CC; Ferrin TE
BMC Bioinformatics; 2006 Jul; 7():339. PubMed ID: 16836757
[TBL] [Abstract][Full Text] [Related]
3. Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.
Zheng G; Lu XJ; Olson WK
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W240-6. PubMed ID: 19474339
[TBL] [Abstract][Full Text] [Related]
4. Tools for the automatic identification and classification of RNA base pairs.
Yang H; Jossinet F; Leontis N; Chen L; Westbrook J; Berman H; Westhof E
Nucleic Acids Res; 2003 Jul; 31(13):3450-60. PubMed ID: 12824344
[TBL] [Abstract][Full Text] [Related]
5. Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.
Goddard TD; Huang CC; Ferrin TE
Structure; 2005 Mar; 13(3):473-82. PubMed ID: 15766548
[TBL] [Abstract][Full Text] [Related]
6. Techniques for visualization of carbohydrate molecules.
Kuttel M; Gain J; Burger A; Eborn I
J Mol Graph Model; 2006 Nov; 25(3):380-8. PubMed ID: 16563824
[TBL] [Abstract][Full Text] [Related]
7. MINT: software to identify motifs and short-range interactions in trajectories of nucleic acids.
Górska A; Jasiński M; Trylska J
Nucleic Acids Res; 2015 Sep; 43(17):e114. PubMed ID: 26024667
[TBL] [Abstract][Full Text] [Related]
8. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.
Lu XJ; Olson WK
Nucleic Acids Res; 2003 Sep; 31(17):5108-21. PubMed ID: 12930962
[TBL] [Abstract][Full Text] [Related]
9. UCSF Chimera--a visualization system for exploratory research and analysis.
Pettersen EF; Goddard TD; Huang CC; Couch GS; Greenblatt DM; Meng EC; Ferrin TE
J Comput Chem; 2004 Oct; 25(13):1605-12. PubMed ID: 15264254
[TBL] [Abstract][Full Text] [Related]
10. Quantitative analysis of nucleic acid three-dimensional structures.
Gendron P; Lemieux S; Major F
J Mol Biol; 2001 May; 308(5):919-36. PubMed ID: 11352582
[TBL] [Abstract][Full Text] [Related]
11. DRAWNA: a program for drawing schematic views of nucleic acids.
Massire C; Gaspin C; Westhof E
J Mol Graph; 1994 Sep; 12(3):201-6, 196. PubMed ID: 7529557
[TBL] [Abstract][Full Text] [Related]
12. RiboVision suite for visualization and analysis of ribosomes.
Bernier CR; Petrov AS; Waterbury CC; Jett J; Li F; Freil LE; Xiong X; Wang L; Migliozzi BL; Hershkovits E; Xue Y; Hsiao C; Bowman JC; Harvey SC; Grover MA; Wartell ZJ; Williams LD
Faraday Discuss; 2014; 169():195-207. PubMed ID: 25340471
[TBL] [Abstract][Full Text] [Related]
13. Nucleic acid modeling tool (NAMOT): an interactive graphic tool for modeling nucleic acid structures.
Tung CS; Carter ES
Comput Appl Biosci; 1994 Jul; 10(4):427-33. PubMed ID: 7528631
[TBL] [Abstract][Full Text] [Related]
14. Barnaba: software for analysis of nucleic acid structures and trajectories.
Bottaro S; Bussi G; Pinamonti G; Reißer S; Boomsma W; Lindorff-Larsen K
RNA; 2019 Feb; 25(2):219-231. PubMed ID: 30420522
[TBL] [Abstract][Full Text] [Related]
15. PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.
Byun Y; Han K
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W416-22. PubMed ID: 16845039
[TBL] [Abstract][Full Text] [Related]
16. Displaying 3D data on RNA secondary structures: coloRNA.
LeBarron J; Mitra K; Frank J
J Struct Biol; 2007 Jan; 157(1):262-70. PubMed ID: 17070699
[TBL] [Abstract][Full Text] [Related]
17. DSSR-enhanced visualization of nucleic acid structures in Jmol.
Hanson RM; Lu XJ
Nucleic Acids Res; 2017 Jul; 45(W1):W528-W533. PubMed ID: 28472503
[TBL] [Abstract][Full Text] [Related]
18. RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
Pietal MJ; Szostak N; Rother KM; Bujnicki JM
BMC Bioinformatics; 2012 Dec; 13():333. PubMed ID: 23259794
[TBL] [Abstract][Full Text] [Related]
19. Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking.
Harvey SC; Wang C; Teletchea S; Lavery R
J Comput Chem; 2003 Jan; 24(1):1-9. PubMed ID: 12483670
[TBL] [Abstract][Full Text] [Related]
20. Synthesis and properties of the simplified nucleic acid glycol nucleic acid.
Meggers E; Zhang L
Acc Chem Res; 2010 Aug; 43(8):1092-102. PubMed ID: 20405911
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
