145 related articles for article (PubMed ID: 16494506)
1. Three sequence rules for chromatin.
Cohanim AB; Kashi Y; Trifonov EN
J Biomol Struct Dyn; 2006 Apr; 23(5):559-66. PubMed ID: 16494506
[TBL] [Abstract][Full Text] [Related]
2. Yeast nucleosome DNA pattern: deconvolution from genome sequences of S. cerevisiae.
Cohanim AB; Kashi Y; Trifonov EN
J Biomol Struct Dyn; 2005 Jun; 22(6):687-94. PubMed ID: 15842173
[TBL] [Abstract][Full Text] [Related]
3. Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans.
Salih F; Salih B; Trifonov EN
J Biomol Struct Dyn; 2008 Dec; 26(3):273-82. PubMed ID: 18808193
[TBL] [Abstract][Full Text] [Related]
4. Sequence structure of human nucleosome DNA.
Kogan SB; Kato M; Kiyama R; Trifonov EN
J Biomol Struct Dyn; 2006 Aug; 24(1):43-8. PubMed ID: 16780374
[TBL] [Abstract][Full Text] [Related]
5. Single-base resolution nucleosome mapping on DNA sequences.
Gabdank I; Barash D; Trifonov EN
J Biomol Struct Dyn; 2010 Aug; 28(1):107-22. PubMed ID: 20476799
[TBL] [Abstract][Full Text] [Related]
6. Sequence-directed mapping of nucleosome positions.
Salih F; Salih B; Trifonov EN
J Biomol Struct Dyn; 2007 Apr; 24(5):489-93. PubMed ID: 17313194
[TBL] [Abstract][Full Text] [Related]
7. Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences.
Ioshikhes I; Bolshoy A; Derenshteyn K; Borodovsky M; Trifonov EN
J Mol Biol; 1996 Sep; 262(2):129-39. PubMed ID: 8831784
[TBL] [Abstract][Full Text] [Related]
8. Gene splice sites correlate with nucleosome positions.
Kogan S; Trifonov EN
Gene; 2005 Jun; 352():57-62. PubMed ID: 15862762
[TBL] [Abstract][Full Text] [Related]
9. The nucleosome position-encoding WW/SS sequence pattern is depleted in mammalian genes relative to other eukaryotes.
Wright GM; Cui F
Nucleic Acids Res; 2019 Sep; 47(15):7942-7954. PubMed ID: 31216031
[TBL] [Abstract][Full Text] [Related]
10. Visible periodicity of strong nucleosome DNA sequences.
Salih B; Tripathi V; Trifonov EN
J Biomol Struct Dyn; 2015; 33(1):1-9. PubMed ID: 24266748
[TBL] [Abstract][Full Text] [Related]
11. Drosophila H2A and H2A.Z Nucleosome Sequences Reveal Different Nucleosome Positioning Sequence Patterns.
Yang D; Ioshikhes I
J Comput Biol; 2017 Apr; 24(4):289-298. PubMed ID: 27992255
[TBL] [Abstract][Full Text] [Related]
12. Nucleosome positioning and nucleosome stacking: two faces of the same coin.
Riposo J; Mozziconacci J
Mol Biosyst; 2012 Apr; 8(4):1172-8. PubMed ID: 22266567
[TBL] [Abstract][Full Text] [Related]
13. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.
Johnson SM; Tan FJ; McCullough HL; Riordan DP; Fire AZ
Genome Res; 2006 Dec; 16(12):1505-16. PubMed ID: 17038564
[TBL] [Abstract][Full Text] [Related]
14. A deformation energy-based model for predicting nucleosome dyads and occupancy.
Liu G; Xing Y; Zhao H; Wang J; Shang Y; Cai L
Sci Rep; 2016 Apr; 6():24133. PubMed ID: 27053067
[TBL] [Abstract][Full Text] [Related]
15. Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae.
Wong B; Chen S; Kwon JA; Rich A
Proc Natl Acad Sci U S A; 2007 Feb; 104(7):2229-34. PubMed ID: 17284586
[TBL] [Abstract][Full Text] [Related]
16. Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context.
Tanaka S; Livingstone-Zatchej M; Thoma F
J Mol Biol; 1996 Apr; 257(5):919-34. PubMed ID: 8632475
[TBL] [Abstract][Full Text] [Related]
17. Nucleosome positioning by sequence, state of the art and apparent finale.
Trifonov EN
J Biomol Struct Dyn; 2010 Jun; 27(6):741-6. PubMed ID: 20232930
[TBL] [Abstract][Full Text] [Related]
18. Painting a perspective on the landscape of nucleosome positioning.
Johnson SM
J Biomol Struct Dyn; 2010 Jun; 27(6):795-802. PubMed ID: 20232934
[TBL] [Abstract][Full Text] [Related]
19. Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene.
Wellinger RE; Thoma F
EMBO J; 1997 Aug; 16(16):5046-56. PubMed ID: 9305646
[TBL] [Abstract][Full Text] [Related]
20. An analysis and prediction of nucleosome positioning based on information content.
Xing YQ; Liu GQ; Zhao XJ; Cai L
Chromosome Res; 2013 Mar; 21(1):63-74. PubMed ID: 23435498
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]