These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

336 related articles for article (PubMed ID: 16522669)

  • 1. Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces.
    Burgoyne NJ; Jackson RM
    Bioinformatics; 2006 Jun; 22(11):1335-42. PubMed ID: 16522669
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ
    Proteins; 2005 Aug; 60(2):245-51. PubMed ID: 15981253
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical analysis and prediction of protein-protein interfaces.
    Bordner AJ; Abagyan R
    Proteins; 2005 Aug; 60(3):353-66. PubMed ID: 15906321
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
    Tuncbag N; Gursoy A; Keskin O
    Bioinformatics; 2009 Jun; 25(12):1513-20. PubMed ID: 19357097
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S; May P; Hoppe A; Frömmel C; Preissner R
    Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH; Li CH; Shen LZ; Gong XQ; Chen WZ; Wang CX
    Proteins; 2005 Aug; 60(2):319-23. PubMed ID: 15981260
    [TBL] [Abstract][Full Text] [Related]  

  • 9. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
    Kinoshita K; Murakami Y; Nakamura H
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Study of protein-protein interaction using conformational space annealing.
    Lee K; Sim J; Lee J
    Proteins; 2005 Aug; 60(2):257-62. PubMed ID: 15981254
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FastContact: a free energy scoring tool for protein-protein complex structures.
    Champ PC; Camacho CJ
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W556-60. PubMed ID: 17537824
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study.
    Bonet J; Caltabiano G; Khan AK; Johnston MA; Corbí C; Gómez A; Rovira X; Teyra J; Villà-Freixa J
    Proteins; 2006 Apr; 63(1):65-77. PubMed ID: 16374872
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Small-world network approach to identify key residues in protein-protein interaction.
    del Sol A; O'Meara P
    Proteins; 2005 Feb; 58(3):672-82. PubMed ID: 15617065
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
    Del Carpio-Muñoz CA; Ichiishi E; Yoshimori A; Yoshikawa T
    Proteins; 2002 Sep; 48(4):696-732. PubMed ID: 12211037
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Blind predictions of protein interfaces by docking calculations in CAPRI.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3085-95. PubMed ID: 20839234
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Classification of protein complexes based on docking difficulty.
    Vajda S
    Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT; Jackson RM
    Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H; Raz R; Schreiber G
    J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein complex prediction based on simultaneous protein interaction network.
    Jung SH; Hyun B; Jang WH; Hur HY; Han DS
    Bioinformatics; 2010 Feb; 26(3):385-91. PubMed ID: 19965885
    [TBL] [Abstract][Full Text] [Related]  

  • 20. From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent.
    Wodak SJ
    Proteins; 2007 Dec; 69(4):697-8. PubMed ID: 17912754
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 17.