98 related articles for article (PubMed ID: 16529771)
1. Structures of in vitro evolved binding sites on neocarzinostatin scaffold reveal unanticipated evolutionary pathways.
Drevelle A; Graille M; Heyd B; Sorel I; Ulryck N; Pecorari F; Desmadril M; van Tilbeurgh H; Minard P
J Mol Biol; 2006 Apr; 358(2):455-71. PubMed ID: 16529771
[TBL] [Abstract][Full Text] [Related]
2. In vitro evolution of the binding specificity of neocarzinostatin, an enediyne-binding chromoprotein.
Heyd B; Pecorari F; Collinet B; Adjadj E; Desmadril M; Minard P
Biochemistry; 2003 May; 42(19):5674-83. PubMed ID: 12741824
[TBL] [Abstract][Full Text] [Related]
3. Disulfide bond substitution by directed evolution in an engineered binding protein.
Drevelle A; Urvoas A; Hamida-Rebaï MB; Van Vooren G; Nicaise M; Valerio-Lepiniec M; Desmadril M; Robert CH; Minard P
Chembiochem; 2009 May; 10(8):1349-59. PubMed ID: 19415706
[TBL] [Abstract][Full Text] [Related]
4. Crystal structure of a glutamate/aspartate binding protein complexed with a glutamate molecule: structural basis of ligand specificity at atomic resolution.
Hu Y; Fan CP; Fu G; Zhu D; Jin Q; Wang DC
J Mol Biol; 2008 Sep; 382(1):99-111. PubMed ID: 18640128
[TBL] [Abstract][Full Text] [Related]
5. Influence of conformational flexibility on complexation-induced changes in chemical shift in a neocarzinostatin protein-ligand complex.
Cioffi M; Hunter CA; Packer MJ
J Med Chem; 2008 Aug; 51(15):4488-95. PubMed ID: 18624396
[TBL] [Abstract][Full Text] [Related]
6. Mapping the energetics of water-protein and water-ligand interactions with the "natural" HINT forcefield: predictive tools for characterizing the roles of water in biomolecules.
Amadasi A; Spyrakis F; Cozzini P; Abraham DJ; Kellogg GE; Mozzarelli A
J Mol Biol; 2006 Apr; 358(1):289-309. PubMed ID: 16497327
[TBL] [Abstract][Full Text] [Related]
7. Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes.
Lokanath NK; Pampa KJ; Takio K; Kunishima N
J Mol Biol; 2008 Jan; 375(4):1013-25. PubMed ID: 18062990
[TBL] [Abstract][Full Text] [Related]
8. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
9. Computational sampling of a cryptic drug binding site in a protein receptor: explicit solvent molecular dynamics and inhibitor docking to p38 MAP kinase.
Frembgen-Kesner T; Elcock AH
J Mol Biol; 2006 May; 359(1):202-14. PubMed ID: 16616932
[TBL] [Abstract][Full Text] [Related]
10. Evidence for structural plasticity of heavy chain complementarity-determining region 3 in antibody-ssDNA recognition.
Schuermann JP; Prewitt SP; Davies C; Deutscher SL; Tanner JJ
J Mol Biol; 2005 Apr; 347(5):965-78. PubMed ID: 15784256
[TBL] [Abstract][Full Text] [Related]
11. Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex.
Flinders J; DeFina SC; Brackett DM; Baugh C; Wilson C; Dieckmann T
Chembiochem; 2004 Jan; 5(1):62-72. PubMed ID: 14695514
[TBL] [Abstract][Full Text] [Related]
12. Fatty-acid-binding protein from the flight muscle of Locusta migratoria: evolutionary variations in fatty acid binding.
Lücke C; Qiao Y; van Moerkerk HT; Veerkamp JH; Hamilton JA
Biochemistry; 2006 May; 45(20):6296-305. PubMed ID: 16700541
[TBL] [Abstract][Full Text] [Related]
13. Structural and dynamic roles of permanent water molecules in ligand molecular recognition by chicken liver bile acid binding protein.
Ricchiuto P; Rocco AG; Gianazza E; Corrada D; Beringhelli T; Eberini I
J Mol Recognit; 2008; 21(5):348-54. PubMed ID: 18654997
[TBL] [Abstract][Full Text] [Related]
14. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L
Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325
[TBL] [Abstract][Full Text] [Related]
15. Structure-based secondary structure-independent approach to design protein ligands: Application to the design of Kv1.2 potassium channel blockers.
Magis C; Gasparini D; Lecoq A; Le Du MH; Stura E; Charbonnier JB; Mourier G; Boulain JC; Pardo L; Caruana A; Joly A; Lefranc M; Masella M; Menez A; Cuniasse P
J Am Chem Soc; 2006 Dec; 128(50):16190-205. PubMed ID: 17165772
[TBL] [Abstract][Full Text] [Related]
16. The X-ray structure of zebrafish (Danio rerio) ileal bile acid-binding protein reveals the presence of binding sites on the surface of the protein molecule.
Capaldi S; Saccomani G; Fessas D; Signorelli M; Perduca M; Monaco HL
J Mol Biol; 2009 Jan; 385(1):99-116. PubMed ID: 18952094
[TBL] [Abstract][Full Text] [Related]
17. Do structurally similar ligands bind in a similar fashion?
Boström J; Hogner A; Schmitt S
J Med Chem; 2006 Nov; 49(23):6716-25. PubMed ID: 17154502
[TBL] [Abstract][Full Text] [Related]
18. Determination of protein-ligand binding modes using complexation-induced changes in (1)h NMR chemical shift.
Cioffi M; Hunter CA; Packer MJ; Spitaleri A
J Med Chem; 2008 Apr; 51(8):2512-7. PubMed ID: 18366177
[TBL] [Abstract][Full Text] [Related]
19. Structure-based mechanism of ligand binding for periplasmic solute-binding protein of the Bug family.
Herrou J; Bompard C; Antoine R; Leroy A; Rucktooa P; Hot D; Huvent I; Locht C; Villeret V; Jacob-Dubuisson F
J Mol Biol; 2007 Nov; 373(4):954-64. PubMed ID: 17870093
[TBL] [Abstract][Full Text] [Related]
20. Crystal structure of the second PDZ domain of SAP97 in complex with a GluR-A C-terminal peptide.
von Ossowski I; Oksanen E; von Ossowski L; Cai C; Sundberg M; Goldman A; Keinänen K
FEBS J; 2006 Nov; 273(22):5219-29. PubMed ID: 17069616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]