These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 16533403)

  • 1. SNA--a toolbox for the stoichiometric analysis of metabolic networks.
    Urbanczik R
    BMC Bioinformatics; 2006 Mar; 7():129. PubMed ID: 16533403
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Algorithmic approaches for computing elementary modes in large biochemical reaction networks.
    Klamt S; Gagneur J; von Kamp A
    Syst Biol (Stevenage); 2005 Dec; 152(4):249-55. PubMed ID: 16986267
    [TBL] [Abstract][Full Text] [Related]  

  • 3. YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
    Schwarz R; Musch P; von Kamp A; Engels B; Schirmer H; Schuster S; Dandekar T
    BMC Bioinformatics; 2005 Jun; 6():135. PubMed ID: 15929789
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Cell++--simulating biochemical pathways.
    Sanford C; Yip ML; White C; Parkinson J
    Bioinformatics; 2006 Dec; 22(23):2918-25. PubMed ID: 17038347
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ScrumPy: metabolic modelling with Python.
    Poolman MG
    Syst Biol (Stevenage); 2006 Sep; 153(5):375-8. PubMed ID: 16986321
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
    Barsky A; Gardy JL; Hancock RE; Munzner T
    Bioinformatics; 2007 Apr; 23(8):1040-2. PubMed ID: 17309895
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GraphCrunch: a tool for large network analyses.
    Milenković T; Lai J; Przulj N
    BMC Bioinformatics; 2008 Jan; 9():70. PubMed ID: 18230190
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Klamt S; Stelling J; Ginkel M; Gilles ED
    Bioinformatics; 2003 Jan; 19(2):261-9. PubMed ID: 12538248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Hierarchical modularity of nested bow-ties in metabolic networks.
    Zhao J; Yu H; Luo JH; Cao ZW; Li YX
    BMC Bioinformatics; 2006 Aug; 7():386. PubMed ID: 16916470
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Presenting and exploring biological pathways with PathVisio.
    van Iersel MP; Kelder T; Pico AR; Hanspers K; Coort S; Conklin BR; Evelo C
    BMC Bioinformatics; 2008 Sep; 9():399. PubMed ID: 18817533
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
    Calzone L; Fages F; Soliman S
    Bioinformatics; 2006 Jul; 22(14):1805-7. PubMed ID: 16672256
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.
    Weniger M; Engelmann JC; Schultz J
    BMC Bioinformatics; 2007 Jun; 8():179. PubMed ID: 17543125
    [TBL] [Abstract][Full Text] [Related]  

  • 13. WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
    Lee DY; Yun C; Cho A; Hou BK; Park S; Lee SY
    Bioinformatics; 2006 May; 22(9):1150-1. PubMed ID: 16543278
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The geometry of the flux cone of a metabolic network.
    Wagner C; Urbanczik R
    Biophys J; 2005 Dec; 89(6):3837-45. PubMed ID: 16183876
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BioNetBuilder: automatic integration of biological networks.
    Avila-Campillo I; Drew K; Lin J; Reiss DJ; Bonneau R
    Bioinformatics; 2007 Feb; 23(3):392-3. PubMed ID: 17138585
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computation of elementary modes: a unifying framework and the new binary approach.
    Gagneur J; Klamt S
    BMC Bioinformatics; 2004 Nov; 5():175. PubMed ID: 15527509
    [TBL] [Abstract][Full Text] [Related]  

  • 17. COPASI--a COmplex PAthway SImulator.
    Hoops S; Sahle S; Gauges R; Lee C; Pahle J; Simus N; Singhal M; Xu L; Mendes P; Kummer U
    Bioinformatics; 2006 Dec; 22(24):3067-74. PubMed ID: 17032683
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
    Planes FJ; Beasley JE
    Brief Bioinform; 2008 Sep; 9(5):422-36. PubMed ID: 18436574
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dizzy: stochastic simulation of large-scale genetic regulatory networks.
    Ramsey S; Orrell D; Bolouri H
    J Bioinform Comput Biol; 2005 Apr; 3(2):415-36. PubMed ID: 15852513
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
    Vlasblom J; Wu S; Pu S; Superina M; Liu G; Orsi C; Wodak SJ
    Bioinformatics; 2006 Sep; 22(17):2178-9. PubMed ID: 16921162
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.