219 related articles for article (PubMed ID: 16548530)
1. Consecutive GA pairs stabilize medium-size RNA internal loops.
Chen G; Turner DH
Biochemistry; 2006 Mar; 45(12):4025-43. PubMed ID: 16548530
[TBL] [Abstract][Full Text] [Related]
2. Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops.
Chen G; Znosko BM; Jiao X; Turner DH
Biochemistry; 2004 Oct; 43(40):12865-76. PubMed ID: 15461459
[TBL] [Abstract][Full Text] [Related]
3. A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops.
Chen G; Kennedy SD; Turner DH
Biochemistry; 2009 Jun; 48(24):5738-52. PubMed ID: 19485416
[TBL] [Abstract][Full Text] [Related]
4. An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA.
Chen G; Kennedy SD; Qiao J; Krugh TR; Turner DH
Biochemistry; 2006 Jun; 45(22):6889-903. PubMed ID: 16734425
[TBL] [Abstract][Full Text] [Related]
5. G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides.
Schroeder S; Kim J; Turner DH
Biochemistry; 1996 Dec; 35(50):16105-9. PubMed ID: 8973181
[TBL] [Abstract][Full Text] [Related]
6. Thermodynamic stabilities of internal loops with GU closing pairs in RNA.
Schroeder SJ; Turner DH
Biochemistry; 2001 Sep; 40(38):11509-17. PubMed ID: 11560499
[TBL] [Abstract][Full Text] [Related]
7. Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA.
Schroeder SJ; Turner DH
Biochemistry; 2000 Aug; 39(31):9257-74. PubMed ID: 10924119
[TBL] [Abstract][Full Text] [Related]
8. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
Chen G; Znosko BM; Kennedy SD; Krugh TR; Turner DH
Biochemistry; 2005 Mar; 44(8):2845-56. PubMed ID: 15723528
[TBL] [Abstract][Full Text] [Related]
9. Stability of RNA hairpins closed by wobble base pairs.
Giese MR; Betschart K; Dale T; Riley CK; Rowan C; Sprouse KJ; Serra MJ
Biochemistry; 1998 Jan; 37(4):1094-100. PubMed ID: 9454601
[TBL] [Abstract][Full Text] [Related]
10. Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs.
Chen G; Kierzek R; Yildirim I; Krugh TR; Turner DH; Kennedy SD
J Phys Chem B; 2007 Jun; 111(24):6718-27. PubMed ID: 17411085
[TBL] [Abstract][Full Text] [Related]
11. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
Vecenie CJ; Morrow CV; Zyra A; Serra MJ
Biochemistry; 2006 Feb; 45(5):1400-7. PubMed ID: 16445282
[TBL] [Abstract][Full Text] [Related]
12. The stability and structure of tandem GA mismatches in RNA depend on closing base pairs.
Walter AE; Wu M; Turner DH
Biochemistry; 1994 Sep; 33(37):11349-54. PubMed ID: 7537087
[TBL] [Abstract][Full Text] [Related]
13. Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs.
SantaLucia J; Kierzek R; Turner DH
Biochemistry; 1991 Aug; 30(33):8242-51. PubMed ID: 1714301
[TBL] [Abstract][Full Text] [Related]
14. Thermodynamics of single mismatches in RNA duplexes.
Kierzek R; Burkard ME; Turner DH
Biochemistry; 1999 Oct; 38(43):14214-23. PubMed ID: 10571995
[TBL] [Abstract][Full Text] [Related]
15. Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Berger KD; Kennedy SD; Turner DH
Biochemistry; 2019 Feb; 58(8):1094-1108. PubMed ID: 30702283
[TBL] [Abstract][Full Text] [Related]
16. Novel cross-strand three-purine stack of the highly conserved 5'-GA/AAG-5' internal loop at the 3'-end termini of Parvovirus genomes.
Chou SH; Chin KH
J Biomol NMR; 2001 Dec; 21(4):307-19. PubMed ID: 11824751
[TBL] [Abstract][Full Text] [Related]
17. The energetics of small internal loops in RNA.
Schroeder SJ; Burkard ME; Turner DH
Biopolymers; 1999-2000; 52(4):157-67. PubMed ID: 11295748
[TBL] [Abstract][Full Text] [Related]
18. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
Burkard ME; Kierzek R; Turner DH
J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
[TBL] [Abstract][Full Text] [Related]
19. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Chen X; McDowell JA; Kierzek R; Krugh TR; Turner DH
Biochemistry; 2000 Aug; 39(30):8970-82. PubMed ID: 10913310
[TBL] [Abstract][Full Text] [Related]
20. NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Lerman YV; Kennedy SD; Shankar N; Parisien M; Major F; Turner DH
RNA; 2011 Sep; 17(9):1664-77. PubMed ID: 21778280
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]