These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 16626189)

  • 1. A rigid-body Newtonian propagation scheme based on instantaneous decomposition into rotation and translation blocks.
    Essiz S; Coalson RD
    J Chem Phys; 2006 Apr; 124(14):144116. PubMed ID: 16626189
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Langevin dynamics of molecules with internal rigid fragments in the harmonic regime.
    Essiz SG; Coalson RD
    J Chem Phys; 2007 Sep; 127(10):104109. PubMed ID: 17867739
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Response of rotation-translation blocked proteins using Langevin dynamics on a locally harmonic landscape.
    Manson AC; Coalson RD
    J Phys Chem B; 2012 Oct; 116(40):12142-58. PubMed ID: 22924611
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.
    Ahmed A; Gohlke H
    Proteins; 2006 Jun; 63(4):1038-51. PubMed ID: 16493629
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency.
    Hafner J; Zheng W
    J Chem Phys; 2009 May; 130(19):194111. PubMed ID: 19466825
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Simulations of rigid bodies in an angle-axis framework.
    Chakrabarti D; Wales DJ
    Phys Chem Chem Phys; 2009 Mar; 11(12):1970-6. PubMed ID: 19280008
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Gain- and loss-of-function approaches in the chick embryo.
    Sauka-Spengler T; Barembaum M
    Methods Cell Biol; 2008; 87():237-56. PubMed ID: 18485300
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NOLB: Nonlinear Rigid Block Normal-Mode Analysis Method.
    Hoffmann A; Grudinin S
    J Chem Theory Comput; 2017 May; 13(5):2123-2134. PubMed ID: 28379696
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular dynamics integration and molecular vibrational theory. I. New symplectic integrators.
    Janezic D; Praprotnik M; Merzel F
    J Chem Phys; 2005 May; 122(17):174101. PubMed ID: 15910017
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mobile Block Hessian Approach with Adjoined Blocks: An Efficient Approach for the Calculation of Frequencies in Macromolecules.
    Ghysels A; Van Speybroeck V; Pauwels E; Van Neck D; Brooks BR; Waroquier M
    J Chem Theory Comput; 2009 May; 5(5):1203-15. PubMed ID: 26609711
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Vibrational modes in partially optimized molecular systems.
    Ghysels A; Van Neck D; Van Speybroeck V; Verstraelen T; Waroquier M
    J Chem Phys; 2007 Jun; 126(22):224102. PubMed ID: 17581039
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cartesian formulation of the mobile block Hessian approach to vibrational analysis in partially optimized systems.
    Ghysels A; Van Neck D; Waroquier M
    J Chem Phys; 2007 Oct; 127(16):164108. PubMed ID: 17979320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Rigid body dynamics approach to Stokesian dynamics simulations of nonspherical particles.
    Kutteh R
    J Chem Phys; 2010 May; 132(17):174107. PubMed ID: 20459156
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Extracting effective normal modes from equilibrium dynamics at finite temperature.
    Martinez M; Gaigeot MP; Borgis D; Vuilleumier R
    J Chem Phys; 2006 Oct; 125(14):144106. PubMed ID: 17042578
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Regular and chaotic motions in applied dynamics of a rigid body.
    Beletskii VV; Pivovarov ML; Starostin EL
    Chaos; 1996 Jun; 6(2):155-166. PubMed ID: 12780243
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Normal modes for large molecules with arbitrary link constraints in the mobile block Hessian approach.
    Ghysels A; Van Neck D; Brooks BR; Van Speybroeck V; Waroquier M
    J Chem Phys; 2009 Feb; 130(8):084107. PubMed ID: 19256597
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Least constraint approach to the extraction of internal motions from molecular dynamics trajectories of flexible macromolecules.
    Chevrot G; Calligari P; Hinsen K; Kneller GR
    J Chem Phys; 2011 Aug; 135(8):084110. PubMed ID: 21895162
    [TBL] [Abstract][Full Text] [Related]  

  • 19. New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates.
    Nakamura S; Kyono D; Ikeguchi M; Shimizu K
    J Comput Chem; 2002 Mar; 23(4):463-9. PubMed ID: 11908082
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Conformational entropy of biomolecules: beyond the quasi-harmonic approximation.
    Numata J; Wan M; Knapp EW
    Genome Inform; 2007; 18():192-205. PubMed ID: 18546487
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.